Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1686 ATGTCTTCGCAATTTCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATAGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTGAAAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACATAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACTGCTGAAAACATGCATAGAAACTTCGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGATTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGAGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGGTGGTAATGACGCGAGGATATAGAACAGAAGTGGAAGAAGAAGAAAGATCACTCAGACAGGCGGGAAGGCGTCGAATCCGATTAATCGCCGACTTCCCAAAACGATTCTCATTTCTGGGTTTAATTATTCATCATCCTCACTACCTAATGTGGATTCATCGCTTCGATTTATCACTCTTCTTCTTCTTCTTCCAATTTTTCTTCCTCTTTCCTTCAACAATTTCAGCGATCAGGACGAATATTGGCTTAGCAGTAAATAGCTCATGTAGGAGCACTGTTCAGGGAAGATATTTGTTGACTGATGATAACGGTTATGTATGTGATGCTTTGTCTGTTGATCCACTATCTCATTGCTGTCCTGGGAAAGGGGAGAAATTTCCTTGTCATGGCTGCAATCTTGTTTCACAATGTTGCAATTCGTACGAATATTGTGTTTCATGCTGCCAGAATCCTTCAAGGACAAAAAGGGATCAAATACTAAAAATCAAAATTGCCAAGCCAGCCACTGCAGGGACATATGCCAGCGTCTTTGATTTCTGTGTTGGGAGGTGTCGTCACAATTCGGAGAGTGTTGTGCACGAAAATGCTTATCACAGTGCTTACCATCATTGCTTCTCTCTGCCGTCATATTCTTCAGGAGTCAACGGCACACAACTAGAATTCAGACTCAATGGCATCAATGTCATTATTGGAAGACGAGGAGAGTCATGTGATTCAGTTTGCAAGTCGAATGGACAATCGTGTGTCCCAAACAAGATTTTGGTCCTAAATCATTGTGACATTATGCAAAAATACTTGAGCTGCAAAGGAGGTTGCTTAGCAAGTGTTGGGGCTGATCAACCTGCTGAAGTTGCTTTTGATGCTCCTAAGGAATTGAATCCAGGAGCATGTTTATATAGTAGCGCACAGTCAATGGTTTCTTGTGATGGCTCACACCCCCATACCAGCAGGCTTTGCCCTTGTGCCTAA 1815 42.31 MSSQFPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLKELSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKININEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGRTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRVVMTRGYRTEVEEEERSLRQAGRRRIRLIADFPKRFSFLGLIIHHPHYLMWIHRFDLSLFFFFFQFFFLFPSTISAIRTNIGLAVNSSCRSTVQGRYLLTDDNGYVCDALSVDPLSHCCPGKGEKFPCHGCNLVSQCCNSYEYCVSCCQNPSRTKRDQILKIKIAKPATAGTYASVFDFCVGRCRHNSESVVHENAYHSAYHHCFSLPSYSSGVNGTQLEFRLNGINVIIGRRGESCDSVCKSNGQSCVPNKILVLNHCDIMQKYLSCKGGCLASVGADQPAEVAFDAPKELNPGACLYSSAQSMVSCDGSHPHTSRLCPCA 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32451798 32464916 + CePI673135_07g016860.1 Cec07g1686 208465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1686 604 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523(InterPro)
Cec07g1686 604 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Cec07g1686 604 NCBIfam ribonuclease HII 16 228 IPR004649 GO:0004523(InterPro)|GO:0016070(InterPro)
Cec07g1686 604 Gene3D - 1 186 IPR036397 GO:0003676(InterPro)
Cec07g1686 604 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 273 IPR001352 GO:0003723(InterPro)|GO:0004523(PANTHER)|GO:0004523(InterPro)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER)
Cec07g1686 604 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523(InterPro)
Cec07g1686 604 FunFam Ribonuclease 188 234 - -
Cec07g1686 604 FunFam Ribonuclease 1 186 - -
Cec07g1686 604 CDD RNase_HII_eukaryota_like 17 233 - -
Cec07g1686 604 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523(InterPro)
Cec07g1686 604 Pfam SREBP regulating gene protein 368 487 IPR019352 GO:2000640(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1686 K10743 - csv:101210143 548.125