Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1716 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAACTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGGTAGGTTTGAGTCTTTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAACTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGTATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTAGTATCAGACCAAATTACAAGCACCACTGCTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 744 43.01 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVVSDQITSTTAPTHAQQVNGFLPGWML 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32698954 32706304 + CePI673135_07g017160.1 Cec07g1716 208495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1716 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec07g1716 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec07g1716 247 FunFam MADS-box transcription factor 1 13 87 - -
Cec07g1716 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 Coils Coil 150 170 - -
Cec07g1716 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec07g1716 247 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec07g1716 247 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1716 247 Coils Coil 121 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1705 Cec-Chr1:31675649 Cec07g1716 Cec-Chr7:32698954 4.00E-71 dispersed
Cec06g0216 Cec-Chr6:2287040 Cec07g1716 Cec-Chr7:32698954 1.70E-82 dispersed
Cec07g1716 Cec-Chr7:32698954 Cec08g1081 Cec-Chr8:22650142 1.10E-65 dispersed
Cec07g1716 Cec-Chr7:32698954 Cec07g1717 Cec-Chr7:32721105 2.20E-42 tandem
Cec11g1650 Cec-Chr11:30825720 Cec07g1716 Cec-Chr7:32698954 3.00E-27 transposed
Cec01g1704 Cec-Chr1:31662116 Cec07g1716 Cec-Chr7:32698954 5.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29984 PF01486 K-box 6.20E-27 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1716 K09264 - csv:101208204 467.233