Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1717 ATGGGAAGAGGTAGAGTTCAGCTGAAGAGAATAGAGAACAAGATCAGTCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGAGGCTGATGTTGCTTTGATTGTCTTCTCCACTAAAGGCAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTGTTATGCAGAGAAACCATTGGCCCCAAATGGAGATCCTGAATTACAGGTAAGTTGGTGTCAGGAGTATCCAAAACTTGCAGCCAGATTGGAAATTATACAGAAGAACTTAAGGCATTATTTGGGAGAAGAACTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCAAGAAAGAACCAACTAATGCAAGAATCCATTTCAACACTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTTGCAAATAAGGTGAAAGAGAATGAGAAGGTTTTGGTTGAACGTGGACAATGCGATGACCTCCCAAACTTGGTTCGTAATCAGCCCATTTTTGCAATGCCGTCACCAATTATTCCTTCTTTATCTATTGGAGTAAACTTGCATGGGAGAGGATCAGATGAAGATGAAACAAGGGCAACAAGCGTCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAATCCTCATAACTAA 750 40.8 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYCYAEKPLAPNGDPELQVSWCQEYPKLAARLEIIQKNLRHYLGEELDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISTLHKKERELQEENRQLANKVKENEKVLVERGQCDDLPNLVRNQPIFAMPSPIIPSLSIGVNLHGRGSDEDETRATSVNNIQIPAWMLSHVTENPHN 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32721105 32726667 + CePI673135_07g017170.1 Cec07g1717 208496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1717 249 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 Pfam K-box region 90 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec07g1717 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cec07g1717 249 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec07g1717 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec07g1717 249 Coils Coil 126 182 - -
Cec07g1717 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec07g1717 249 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2284 Cec-Chr4:40466887 Cec07g1717 Cec-Chr7:32721105 1.10E-30 dispersed
Cec05g0918 Cec-Chr5:7959993 Cec07g1717 Cec-Chr7:32721105 1.30E-41 dispersed
Cec07g1717 Cec-Chr7:32721105 Cec08g1082 Cec-Chr8:22663580 9.20E-60 dispersed
Cec07g1716 Cec-Chr7:32698954 Cec07g1717 Cec-Chr7:32721105 2.20E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29985 PF01486 K-box 7.40E-29 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1717 K09264 - csv:101218674 428.328