Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1766 ATGCCTGCAGGCAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCAGCCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACCGTGCACCACCCACATAGATCGGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCGAGGACGAGACAGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTTAATTTGTGTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCCACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 930 43.76 MPAGKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVEDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSSSTTTTNNLPFLTSQQPQDNNNLHNFNHLNLCLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33245332 33246839 - CePI673135_07g017660.1 Cec07g1766 208545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1766 309 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Cec07g1766 309 MobiDBLite consensus disorder prediction 1 16 - -
Cec07g1766 309 MobiDBLite consensus disorder prediction 168 185 - -
Cec07g1766 309 MobiDBLite consensus disorder prediction 287 309 - -
Cec07g1766 309 MobiDBLite consensus disorder prediction 1 34 - -
Cec07g1766 309 Pfam TCP family transcription factor 60 175 IPR017887 -
Cec07g1766 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 275 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Cec07g1766 309 MobiDBLite consensus disorder prediction 159 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1766 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1716 Cec-Chr1:31794391 Cec07g1766 Cec-Chr7:33245332 2.60E-31 dispersed
Cec03g0745 Cec-Chr3:8173146 Cec07g1766 Cec-Chr7:33245332 4.20E-24 dispersed
Cec04g2176 Cec-Chr4:39564172 Cec07g1766 Cec-Chr7:33245332 1.30E-24 dispersed
Cec06g1756 Cec-Chr6:31089293 Cec07g1766 Cec-Chr7:33245332 1.30E-33 dispersed
Cec07g1766 Cec-Chr7:33245332 Cec11g1812 Cec-Chr11:32313505 1.50E-19 dispersed
Cec11g0564 Cec-Chr11:6177267 Cec07g1766 Cec-Chr7:33245332 1.40E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g0828 . 48 262 TCP Transcription Factor Family AT5G23280 63.1 6.0e-67 251.1
Cec02g1490 . 37 257 TCP Transcription Factor Family AT5G23280 59.4 1.2e-59 226.9
Cec06g0019 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 3.8e-67 252.3
Cec05g2670 . 66 160 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cec01g1783 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cec11g1393 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cec11g1393 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cec05g1534 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.0e-60 229.2
Cec06g0201 . 26 257 TCP Transcription Factor Family AT3G27010 51.0 6.2e-53 204.9
Cec02g1490 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.3e-63 240.0
Cec01g0828 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cec11g1393 . 148 389 TCP Transcription Factor Family AT1G35560 50.4 1.6e-43 173.7
Cec07g1766 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29989 PF03634 TCP 5.50E-28 No_clan Cec TF