Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec07g1815 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTTAACGGAACAAATCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACGCGGGCTTGTAATGCGGGCCAGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGAGACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGGGGCGGTCTCCACCGTTGAATATCTGCCGGAGGAAAAAATTGACGGGGCTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGAAGGGGAAATGAACGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA 651 55.15 MFQGFVFGINDVYGHEFSAMSLPEFTNSQLTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGQFCQRKVCFFAHSPEELRPETKQKFNLNAHRLRGAVSTVEYLPEEKIDGASEIPVRENGGGRGNERSFGLEVSELDSPHIDWISELLQ 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 33863386 33864036 - CePI673135_07g018150.1 Cec07g1815 208594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec07g1815 216 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
Cec07g1815 216 Gene3D - 81 154 - -
Cec07g1815 216 PANTHER UNKEMPT FAMILY MEMBER 36 151 IPR045234 -
Cec07g1815 216 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Cec07g1815 216 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
Cec07g1815 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Cec07g1815 216 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1815 Cec-Chr7:33863386 Cec11g0201 Cec-Chr11:2165280 5.00E-46 dispersed
Cec07g1815 Cec-Chr7:33863386 Cec05g1948 Cec-Chr5:31562905 3.80E-46 transposed
Cec07g1815 Cec-Chr7:33863386 Cec03g1649 Cec-Chr3:34662962 3.80E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29994 PF00642 zf-CCCH 1.20E-05 CL0537 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec07g1815 - - - 0.0