Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0043 ATGTCCACATCCACCAGAACCAACCATATAGCTTCTACATTCTCCACATCTAATCTTCACCATTTGCACAATTTCTATTCTTTCCTTCATCATTCATTCCCTCCGGCCATGGCTTCTTTGGCAGCCTCCACCGCCGCCGCCTCCCTTGGCGTCTCTGAAATGCTGAGAAATCCTCTCAGCTTCTCCGGTGCCTCCGCTAGGTCAGCTCCCTCTGCTTCTAGCCCAGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCTGCCGCACCATCCAAGCCAAAGCCCTCTGCCGTCTCCCCAGTCAACGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCGGAAGGGCTGTTGGACCGATCGGAGATCCCTGAGTATTTGAACGGAGAAGTCCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCGTTTGAGTTGATTCATGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATTCCTGAGGCCTTCAACAAATTCGGAGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAATACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCGGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATATTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCGGACCAAGCAGCGATTTTGAAGGTGAAGGAGATCAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCGGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 984 50.61 MSTSTRTNHIASTFSTSNLHHLHNFYSFLHHSFPPAMASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 798001 800577 + CePI673135_08g000430.1 Cec08g0043 208685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0043 327 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 55 322 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cec08g0043 327 Gene3D Chlorophyll a/b binding protein domain 116 327 - -
Cec08g0043 327 FunFam Chlorophyll a-b binding protein, chloroplastic 116 327 - -
Cec08g0043 327 SUPERFAMILY Chlorophyll a-b binding protein 108 317 - -
Cec08g0043 327 Pfam Chlorophyll A-B binding protein 129 290 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2142 Cec-Chr4:39269986 Cec08g0043 Cec-Chr8:798001 4.20E-55 dispersed
Cec08g0043 Cec-Chr8:798001 Cec10g0627 Cec-Chr10:8406037 5.40E-52 dispersed
Cec08g0043 Cec-Chr8:798001 Cec02g1928 Cec-Chr2:37141034 6.20E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0043 K08916 - csv:101218137 528.094