Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0075 ATGCTGAAGGACGTTGAGAAGAAGTACGCACTGTTTTCGAACGGGTTTCCGTCATTCCCTCGCTCGTTGTCCTTTGTGGTAGACCGAACCCTCCCTTTCCAGCTCATCCAGAAGCAGAAGCAGGATGATGAAGCTACCGCGCCGGTTGTCCAGTATACAGTGCCGGAAATTTCTTATGTATTTCAACTGAATCAGTCGGCTTTTATTGTTCTTTTGTGTATTTCGGACGTCTTGTTCTTGGTTAGAGTAGCTATTGGGGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCGACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGA 799 43.43 MLKDVEKKYALFSNGFPSFPRSLSFVVDRTLPFQLIQKQKQDDEATAPVVQYTVPEISYVFQLNQSAFIVLLCISDVLFLVRVAIGGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1255681 1269909 + CePI673135_08g000750.1 Cec08g0075 208717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0075 266 SUPERFAMILY ssDNA-binding transcriptional regulator domain 150 266 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec08g0075 266 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 129 266 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cec08g0075 266 Pfam Whirly transcription factor 159 266 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cec08g0075 266 Gene3D Transcriptional Coactivator Pc4; Chain A 145 266 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0075 Cec-Chr8:1255681 Cec08g0917 Cec-Chr8:21004591 1.20E-30 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30000 PF08536 Whirly 3.40E-44 CL0609 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0075 K26561 - csv:101219085 278.1