Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0077 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCAACATGGGACTCGAATCGTCGAACGAACCACAATGCGAAGAAGCACCTCCTCCACCCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.42 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQINMGLESSNEPQCEEAPPPPSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1305877 1307375 - CePI673135_08g000770.1 Cec08g0077 208719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0077 197 SMART ring_2 109 150 IPR001841 -
Cec08g0077 197 MobiDBLite consensus disorder prediction 178 197 - -
Cec08g0077 197 CDD RING-H2_EL5-like 109 151 - -
Cec08g0077 197 Pfam Ring finger domain 108 151 IPR001841 -
Cec08g0077 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Cec08g0077 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cec08g0077 197 PANTHER RING-H2 FINGER PROTEIN ATL16 21 173 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cec08g0077 197 MobiDBLite consensus disorder prediction 171 197 - -
Cec08g0077 197 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0177 Cec-Chr1:1712823 Cec08g0077 Cec-Chr8:1305877 1.60E-20 dispersed
Cec08g0077 Cec-Chr8:1305877 Cec08g0844 Cec-Chr8:20247967 9.30E-15 dispersed
Cec08g0077 Cec-Chr8:1305877 Cec11g0702 Cec-Chr11:7759792 3.20E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0077 K19039 - csv:101219324 349.747