Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0157 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGCTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACACCGGAGATGGCGGCAGCGGCCTATGATGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCACATCTTGTCAGCTCTCTTCCCTTCCCTCTTAGCTCCACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGTCTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGATGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG 555 54.95 MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVSSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3036294 3036848 - CePI673135_08g001570.1 Cec08g0157 208799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0157 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0157 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0157 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 146 IPR051032 -
Cec08g0157 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0157 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0157 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0157 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0157 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Cec08g0157 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Cec08g0157 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec07g1316 Cec-Chr7:28686603 Cec08g0157 Cec-Chr8:3036294 1.60E-21 dispersed
Cec08g0157 Cec-Chr8:3036294 Cec10g0252 Cec-Chr10:2843932 2.20E-26 dispersed
Cec08g0152 Cec-Chr8:2914168 Cec08g0157 Cec-Chr8:3036294 7.30E-47 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30004 PF00847 AP2 3.60E-13 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0157 - - - 0.0