Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec08g0201 | ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGAGGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA | 618 | 41.42 | MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMEENISNTTNIEPVNITNCQYPLTIQDELFQLCT | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3764796 | 3768236 | + | CePI673135_08g002010.1 | Cec08g0201 | 208843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec08g0201 | 205 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec08g0201 | 205 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 179 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cec08g0201 | 205 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 56 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | Pfam | K-box region | 88 | 173 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cec08g0201 | 205 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cec08g0201 | 205 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | SUPERFAMILY | SRF-like | 1 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cec08g0201 | 205 | Gene3D | - | 15 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec08g0201 | Cec-Chr8:3764796 | Cec08g0211 | Cec-Chr8:3858851 | 6.20E-30 | dispersed | |
Cec08g0201 | Cec-Chr8:3764796 | Cec08g1081 | Cec-Chr8:22650142 | 2.30E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30005 | PF01486 | K-box | 3.30E-17 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec08g0201 | - | - | - | 0.0 |