Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0211 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTAGCTTCTCGCAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTTGAAGGTTGTTCAAGCTTTGCTTGAGAAGAGCACAAGCAGTTGCATGGTTCGTGATTTGAATGGCTTGATTCATCTCCACTATGCAGTGATCAATGGCCAAATTCATGTGATTGAGTTGGTGGCAACCCTGATTGTTACAGTGGCTTTTCAAAGTGCCCTTTGGCAACAAGATATTTCTTTCAACTCCACTGCTGCTGTTCCTCATTCGTTTCGTAGTAGCGACACTTTGAAAACTTTCGTAGTTGGAACTGCAATAATGGCCTACCCAACTTCGGATCAAAAGAGATCGTTACTCACTTTACCTACTCACAGACTCTATCTCATTCTTTGCATCAATATGTGTCATTATGTTCATTATAAGTCGATTGCCTTTGAAGAATAA 1053 40.46 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHLGLKVVQALLEKSTSSCMVRDLNGLIHLHYAVINGQIHVIELVATLIVTVAFQSALWQQDISFNSTAAVPHSFRSSDTLKTFVVGTAIMAYPTSDQKRSLLTLPTHRLYLILCINMCHYVHYKSIAFEE 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3858851 3870644 + CePI673135_08g002110.1 Cec08g0211 208853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0211 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec08g0211 350 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec08g0211 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Cec08g0211 350 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec08g0211 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 Coils Coil 124 163 - -
Cec08g0211 350 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g0211 350 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1920 Cec-Chr2:37036490 Cec08g0211 Cec-Chr8:3858851 1.20E-66 dispersed
Cec03g0683 Cec-Chr3:7344192 Cec08g0211 Cec-Chr8:3858851 1.60E-72 dispersed
Cec06g0025 Cec-Chr6:282325 Cec08g0211 Cec-Chr8:3858851 7.10E-35 dispersed
Cec07g1034 Cec-Chr7:25096581 Cec08g0211 Cec-Chr8:3858851 1.10E-10 dispersed
Cec08g0201 Cec-Chr8:3764796 Cec08g0211 Cec-Chr8:3858851 6.20E-30 dispersed
Cec08g0211 Cec-Chr8:3858851 Cec08g1081 Cec-Chr8:22650142 2.40E-37 dispersed
Cec08g0211 Cec-Chr8:3858851 Cec04g2114 Cec-Chr4:39048396 3.00E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30006 PF01486 K-box 2.40E-26 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0211 K09264 - csv:101208072 415.616