Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0216 ATGCATGGCTACAGCCGCTTGAACACTTCGCGTTCCACTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGCCAACTAAGGAGTCGGAGTGGCTGTCATAGTGGTAGCGGTAACGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGCAGCATTATGGAGAAATTGGTTTTTCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCCATTTCCAATCTGAAAACCAGGGTTGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGAAGTCCTCAGGTTTTTGAGAAGCTATGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACACATGCGTTGTCAACTGCATGGAATTCGAGAGTGCACCATGTTTGGAAACCATGCATCAGTAGAAGCACTATGACAGAGTTACCAAAGTCCAATGGTTTTCTTATCATTGAAGCCAATGGTGGGTTAAATCAGCAAAGGTTGTCGATATGTGATGCAGTTGCAGTGGCTGGACTACTGAATGCTTCTCTTGTCATTCCAATATTTCATTTGAATAGTGTTTGGCGAGATTCAAGCAAATTTGGTGATATTTTCGATGAAGATTTTTTCATACAAGCATTAAGCAAGCATGTTAATATTGTGAGAGAGCTCCCAGCTGATGTACTGCAGCAGTATGATAATAATATAAGCAGTATTGTGAACTTAAGAGTAAAAGCATGGTCAAGCCCAATGTACTATTTGCATAAAGTCCTTCCGAAGCTCTTGCAATTGAGGGCTGTAAGGATTGCCCCATTCTCCAACCGGTTGGCTCATGGAGTTCCTTCAGATGTTCAAGCACTTAGATGCTTAGCCAATTTTGAAGCTTTGAGGTTTGCAGAATCTATAAGAATACTGGCAGATCTCATGGTTGATCGGATGATCAAAAAAAGCTCTCAGAGTGGAGGAAAATATATTTCTGTGCATCTTCGCTTTGAGGAGGACATGGTTGCATTTTCGTGCTGTGAATATGATGGTGGAGAGGAAGAGAAGCATGAGATGGACCTGGCTAGAGAAAGGAGCTGGAGAGGAAAATTCAGAAGAAGGGGGAGGGTGATAAGGCCTGGTGCTAATAGGGTGGATGGAAAATGTCCTTTAACCCCACTGGAGGTCGGACTGATGCTTAGAGGAATGGGTTTTGATAATACAACTTCCATATATGTTGCAGCAGGAAAAATTTATAAAGCAGAGAAGTATATGGCTCCACTTAGGCAGATGTTTCCACGTTTAGAAACTAAAGATACTATAGCTACCAAGGAAGAACTTGCTCCATTCCAGGGCCACTCTTCTCGATTGGCTGCTCTTGATTACACAGTATGTCTTCATAGTGAAGTCTTTGTCACAACTCAAGGTGGGAATTTCCCCCACTTTTTGACGGGTCACAGGCGCTATATTTATGGCGGACATGCAAAGACAGTCAAACCAGATAAGAGGAAACTAGCATTAATTTTTGATGATCCTAATATACGATGGCAAAACTTCGCGCAACAAATGCAAGATATGCTTCGCCACAACGATCAAAAGGGAATGGAAATGAAAAAGCCCAGTGGATCGTTGTATACGTTTCCCATGCCAGATTGCATGTGCAAAGTACCAAACACGAAGAACCATGATTAA 1722 43.26 MHGYSRLNTSRSTVSQSPPASPRHRQLRSRSGCHSGSGNGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHALSTAWNSRVHHVWKPCISRSTMTELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNASLVIPIFHLNSVWRDSSKFGDIFDEDFFIQALSKHVNIVRELPADVLQQYDNNISSIVNLRVKAWSSPMYYLHKVLPKLLQLRAVRIAPFSNRLAHGVPSDVQALRCLANFEALRFAESIRILADLMVDRMIKKSSQSGGKYISVHLRFEEDMVAFSCCEYDGGEEEKHEMDLARERSWRGKFRRRGRVIRPGANRVDGKCPLTPLEVGLMLRGMGFDNTTSIYVAAGKIYKAEKYMAPLRQMFPRLETKDTIATKEELAPFQGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLTGHRRYIYGGHAKTVKPDKRKLALIFDDPNIRWQNFAQQMQDMLRHNDQKGMEMKKPSGSLYTFPMPDCMCKVPNTKNHD 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4037428 4050544 - CePI673135_08g002160.1 Cec08g0216 208858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0216 573 CDD O-FucT_plant 170 504 IPR024709 -
Cec08g0216 573 PIRSF UCP009360 34 568 IPR024709 -
Cec08g0216 573 Pfam GDP-fucose protein O-fucosyltransferase 170 499 IPR019378 -
Cec08g0216 573 MobiDBLite consensus disorder prediction 1 44 - -
Cec08g0216 573 PANTHER O-FUCOSYLTRANSFERASE FAMILY PROTEIN 62 565 IPR024709 -
Cec08g0216 573 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0216 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0630 Cec-Chr1:6770853 Cec08g0216 Cec-Chr8:4037428 6.20E-189 dispersed
Cec05g2824 Cec-Chr5:38510445 Cec08g0216 Cec-Chr8:4037428 1.30E-87 dispersed
Cec08g0216 Cec-Chr8:4037428 Cec11g1609 Cec-Chr11:30373382 4.10E-156 dispersed
Cec08g0216 Cec-Chr8:4037428 Cec04g1534 Cec-Chr4:34822053 3.40E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1491 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00035 Cam08g0034 Cec08g0216 Cco08g0089 Clacu08g0051 Cmu08g0050 Cre08g0040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00026 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010910 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31