Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0290 ATGGGCTGTGCACAAACGAAACATTCGGTGAGTTCGCCCTCTGGGGGAATTGAGAAGCTGAAATTGGAAAATGGGTATGCTGGGATTGAAGGTTTTCTTGCTCATCGGAGGTCTGTCAGGCAGAGGAGATATGTCGGCAGGGAGTCGTCTGAAGCAGAGAAGCCTCACGGCGGTGATGGCGGCGGCGGGAATGGCCAATTTGGTTCAGAGAAGATTGAGCTAGTGGATGGGTGGCCCAAATGGCTTACTAGCAATATTCCTAAGCATGTGTTGGCTGGCTTGGTACCCAAGAGTGTGGAGGCCTATGACAAGCTTGACAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACATCAGAACCTGAGAGTGTGAAGTTCATGGCCAGAGAAATTATGATACTCCTGAAACTGGATCACCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTTGATTTTATGCAGACTGATTTAGCCCGAGTTATTTCCCACCCTGATGTATGGCTTACGGAGCCTCAGGTTAAATGCTATATGCATCAGCTACTCTCTGGTCTGAAGCATTGCCATGATAAGGGGATTTTGCATCGTGATATCAAAGGATCGAACCTGTTAATTGACAAAAATGGGACACTAAAGATTGCCGATTTTGGGCTTGCCATTTTCATCAGTCCAAAGAGGCCTCTTACAAATCGTATTGTGACTCTTTGGTATCGTGCTCCAGAGCTATTGTTAGGTGCTACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGATGCCTCTTGGCAGAAATGTTCACGGGAAGGCCAATTCTGCCAGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGTTATTTGGTACACCATCTGAGGAATATTGGAGAAAACTCAAGCTGGCACCAACTTTCAGACCTCCACAGTCATATAGACCTACTCTCGTAGAGTTTTTTAAGCATTTTCCATCATCTTCTCTAGGCCTACTCAGCACTTTACTCGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTTAGCCCTCGAGAATGAATTCTTTTACACAAGCCCACTGGCATGCGGCCTTTCGGATCTTCCTGTAATCCACAGTGAGCCCGACGAACTGGATCAAACGAATCAGCAGAAGTGTAGGAATGCTAAAGTGACAAGGCGTTCTCACACACACCGAGAGCGCCGGAGGAAAGATTTAACTGCAGGAATACCGAAAGAAGAATCAAACATTCCCAAACAGGTTTCACAGCAAACGGGAGATGGTGACAAACAAGGTGAAGAGCGAGGGAGTACTATGACAAGCACCTCCTCAAGTGTTAACATGGGAGGGCAAAAGGGGAGTAAAACGAAGAGCAGTTCCTCAAGTGTTAACACAGCAGCACGAAAAGGGAGTACAACGACAAGCATTTCCTCAAGTGTTAACACAGGAGGGGGAAAGACGACGAACACCTTCTCGAGTGTGAACATGGGAGGGGGAAAGGGAAGCTCTCACTTCTTACTATCTCCAATTCCATATTCTACTAGAAAATCATCGAGAACTCTAGGCCATCTTGAGGGTGCTAAGAACTTCAACTTGCCTTCATTGCCTAAGACGAGAGAATACTCAACTTTCAACAACGAAGAGCATGGTGCATGTACCACAGGTCAGGTTCAGAGATCAATCTCGACCAGAGATCTCAGGAACTTGGGGCGTAAAGAGCATTTGAAATTATATGTCGATGCTTAA 1824 45.83 MGCAQTKHSVSSPSGGIEKLKLENGYAGIEGFLAHRRSVRQRRYVGRESSEAEKPHGGDGGGGNGQFGSEKIELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTSEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMQTDLARVISHPDVWLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGTLKIADFGLAIFISPKRPLTNRIVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGRPILPGRTEVEQLHKIFKLFGTPSEEYWRKLKLAPTFRPPQSYRPTLVEFFKHFPSSSLGLLSTLLALEPSYRGSASLALENEFFYTSPLACGLSDLPVIHSEPDELDQTNQQKCRNAKVTRRSHTHRERRRKDLTAGIPKEESNIPKQVSQQTGDGDKQGEERGSTMTSTSSSVNMGGQKGSKTKSSSSSVNTAARKGSTTTSISSSVNTGGGKTTNTFSSVNMGGGKGSSHFLLSPIPYSTRKSSRTLGHLEGAKNFNLPSLPKTREYSTFNNEEHGACTTGQVQRSISTRDLRNLGRKEHLKLYVDA 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6246007 6250525 - CePI673135_08g002900.1 Cec08g0290 208932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0290 607 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Cec08g0290 607 FunFam probable serine/threonine-protein kinase At1g54610 89 184 - -
Cec08g0290 607 Pfam Protein kinase domain 102 382 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0290 607 Gene3D Transferase(Phosphotransferase) domain 1 185 431 - -
Cec08g0290 607 SUPERFAMILY Protein kinase-like (PK-like) 97 385 IPR011009 -
Cec08g0290 607 PANTHER CELL DIVISION PROTEIN KINASE 102 382 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cec08g0290 607 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524(InterPro)
Cec08g0290 607 MobiDBLite consensus disorder prediction 402 522 - -
Cec08g0290 607 SMART serkin_6 102 382 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0290 607 MobiDBLite consensus disorder prediction 461 522 - -
Cec08g0290 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0290 607 FunFam Putative serine/threonine-protein kinase 185 420 - -
Cec08g0290 607 ProSiteProfiles Protein kinase domain profile. 102 382 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0290 607 MobiDBLite consensus disorder prediction 43 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0290 K08819 - - csv:101209601 970.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1271 Cec-Chr4:32309395 Cec08g0290 Cec-Chr8:6246007 5.00E-141 dispersed
Cec08g0290 Cec-Chr8:6246007 Cec11g0067 Cec-Chr11:826153 3.60E-118 dispersed
Cec08g0290 Cec-Chr8:6246007 Cec05g0684 Cec-Chr5:5607655 2.20E-123 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72174 PF00069 Pkinase 6.30E-67 CL0016 Cec PK