Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0303 ATGTCGATGCTTAACTCCTTCTTCAACAAGGGCTTCAGGGCTGCCCAATGTAAAACACTGCTTAAATTGACAATTCCACGAATAAAGCTGCTGAGGAATCGAAGGGAGATCCAGCTTAAGCAGATGCGCCGAGACATAGCTAAGCTTCTCGAGACAGGACAAGAAGCTACTGCTCGCATTCGGGTAGAGCATATAATCCGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTTGAATTGTTTTGTGAGCTTATTGTTGTTCGCCTTCCAATTATTGAAACACAAAGGGAATGTCCGCTAGACTTGAAAGAAGCGATCTCAAGTGTGTGTTTTGCTGCTCCAAGGTGTGCTGATCTTACAGAGCTTCTCCAGGTTCAGATGCTTTTTGCTGCCAAATATGGGAAGGAATTTGTATCAGCTGCAACTGAGCTCATGCCTAACTGTGGTGTTAATCGTCAGTTGATAGAGCTGCTTTCTGTTCGTGCTCCTTCACCTGAAAAGAAACTGAAGCTGTTAAAGGAAATCGCCGAAGAGCACGACTTAGATTGGAATCCTGCTGAAACTGAAGCTGAGTTTAACAAATCTCCAGAGGATTTGCTTAATGGATCAGCGCAGTTTGTCAGCACATCAAAATTACCCCTTCCGCAAGAGAAACACAATGAAATATCCAATGCTACTCCTGATTTGGCTAGTGCGCCACAACCTGATTCTGATTCTGAATTGGACATGTTAGACTTTCCTGAAGTTCCAAAGATATCAGTATGTCCGCAGCCTACTATAAATGCTGGCTCTGCATCGTCAATTATCCCACCTCCATCTGTGTCGCCACCGCCTGAAACTGATCTTTCTTCATTGAAGTATTCTGGTATTCCTGAAACACCGCCCCAAGATCTACACTTGAAACATGAGGAGGTGACTTCAGTGAGATCTGTTTCACCCAGCAACGATCAAATGAATATTTCTGTTGGTGAAGATAAACAGTATTTGCCTTTTATTACTCCCCCATCATTGTCATCTTCATTCCCTCATAGACAAACTGATTTGTCGCCACCCTCCGATCCAACGAACCCTGAGGAGACGTTTGGTTTCAAATCACAGATCAAACAGGAGATAAATTCACCACTACCCTCTGTTTCAAGGACCCCTGAGGAGAAGTTTGGTTTCAGACCACAGTTTGAAGCAGAGATAAATTCACCACTGTCCCCCGTTTCAAGGACAATGAGTGAGATCAATGCAGATGTCGGTGTGGATTTGCAGGACGTGTTGGCAGCTGCACAGGCTGCTGCTGAAACTGCTGAACGTGCTGCCGCTGCAGCTCGCTCTGCAGCTAGTCTTGCGAAGGTTAGAATTGACGAGCTCACAAAGAAAAAGAATGATAAGGACCGTGAAATTAGTTGCGAAAATCCGTTCCACGGAGCTACTGCAAGTCCACCAGATCATAAAGAAATATTCCAACTAAACCAACAAGATTCTCTGGGTCATCATTATTCTTCTGCTGTGCCATATTATTCACAAGATTCTTTCCAAGAACATCACAGAGTAAGCCGCGATTCAGATGTATCTGATCACAACCAACTCAAGCCAGAGAAATCGGGTTACGATTCCTCTCCCAGTGATTCACCAACTGAACACATAGCAGTCCCTCATCAGCCCCAGAGGCTCCCATCAATGGACGACGACCCATACTTTTCATACCCGAATTTATTTACATCACAGAAACCAAATCCAGGATCTGATCATTCATCAGCATCAGCTGGTGGTTCCTGA 1767 44.54 MSMLNSFFNKGFRAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQVQMLFAAKYGKEFVSAATELMPNCGVNRQLIELLSVRAPSPEKKLKLLKEIAEEHDLDWNPAETEAEFNKSPEDLLNGSAQFVSTSKLPLPQEKHNEISNATPDLASAPQPDSDSELDMLDFPEVPKISVCPQPTINAGSASSIIPPPSVSPPPETDLSSLKYSGIPETPPQDLHLKHEEVTSVRSVSPSNDQMNISVGEDKQYLPFITPPSLSSSFPHRQTDLSPPSDPTNPEETFGFKSQIKQEINSPLPSVSRTPEEKFGFRPQFEAEINSPLSPVSRTMSEINADVGVDLQDVLAAAQAAAETAERAAAAARSAASLAKVRIDELTKKKNDKDREISCENPFHGATASPPDHKEIFQLNQQDSLGHHYSSAVPYYSQDSFQEHHRVSRDSDVSDHNQLKPEKSGYDSSPSDSPTEHIAVPHQPQRLPSMDDDPYFSYPNLFTSQKPNPGSDHSSASAGGS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6633490 6637840 + CePI673135_08g003030.1 Cec08g0303 208945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0303 588 MobiDBLite consensus disorder prediction 565 588 - -
Cec08g0303 588 MobiDBLite consensus disorder prediction 224 243 - -
Cec08g0303 588 MobiDBLite consensus disorder prediction 333 360 - -
Cec08g0303 588 MobiDBLite consensus disorder prediction 509 529 - -
Cec08g0303 588 Gene3D - 5 193 IPR042277 -
Cec08g0303 588 MobiDBLite consensus disorder prediction 263 297 - -
Cec08g0303 588 Coils Coil 422 442 - -
Cec08g0303 588 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031(InterPro)
Cec08g0303 588 PANTHER IST1 FAMILY MEMBER 10 575 IPR005061 GO:0008104(PANTHER)|GO:0015031(InterPro)
Cec08g0303 588 MobiDBLite consensus disorder prediction 508 588 - -
Cec08g0303 588 MobiDBLite consensus disorder prediction 530 545 - -
Cec08g0303 588 MobiDBLite consensus disorder prediction 457 480 - -
Cec08g0303 588 FunFam IST1-like protein isoform A 6 192 - -
Cec08g0303 588 Coils Coil 32 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0303 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0967 Cec-Chr3:15979050 Cec08g0303 Cec-Chr8:6633490 1.40E-34 dispersed
Cec03g0968 Cec-Chr3:15998586 Cec08g0303 Cec-Chr8:6633490 8.10E-29 dispersed
Cec03g1642 Cec-Chr3:34608932 Cec08g0303 Cec-Chr8:6633490 6.00E-61 dispersed
Cec04g1780 Cec-Chr4:36702367 Cec08g0303 Cec-Chr8:6633490 1.00E-66 dispersed
Cec08g0303 Cec-Chr8:6633490 Cec08g0543 Cec-Chr8:16046638 5.60E-23 dispersed
Cec08g0303 Cec-Chr8:6633490 Cec05g2507 Cec-Chr5:36103855 1.10E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38