Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0305 ATGAGGAGCAAATGTCTTGGTTGGAGCTTGTCACGTCACTTTCCACGATGTAGCGCCAAGGCGTTTCTGACTGCGTTTGGTCAGCTCGGTCAGCATCTTTTACCATTTGGATCTGATATTGATGATCACCTAATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAAAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCGAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCGGGATCTCCTCCATTTTCTCCTCCGCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACCGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGCATCATGCTTTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTAGAAATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA 2016 45.19 MRSKCLGWSLSRHFPRCSAKAFLTAFGQLGQHLLPFGSDIDDHLMEMEQFKVLALGFVSLILLVPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6684058 6694136 - CePI673135_08g003050.1 Cec08g0305 208947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0305 671 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 56 671 - -
Cec08g0305 671 SUPERFAMILY L domain-like 75 238 - -
Cec08g0305 671 Gene3D Ribonuclease Inhibitor 71 258 IPR032675 -
Cec08g0305 671 Pfam Protein tyrosine and serine/threonine kinase 351 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0305 671 Gene3D Transferase(Phosphotransferase) domain 1 425 642 - -
Cec08g0305 671 ProSiteProfiles Protein kinase domain profile. 348 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0305 671 SMART serkin_6 348 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0305 671 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Cec08g0305 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0305 671 FunFam Somatic embryogenesis receptor kinase 1 317 424 - -
Cec08g0305 671 FunFam Somatic embryogenesis receptor-like kinase 1 425 642 - -
Cec08g0305 671 FunFam Somatic embryogenesis receptor kinase 1 71 258 - -
Cec08g0305 671 Pfam Leucine rich repeat N-terminal domain 73 112 IPR013210 -
Cec08g0305 671 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cec08g0305 671 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Cec08g0305 671 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Cec08g0305 671 Pfam Leucine Rich Repeat 212 230 IPR001611 GO:0005515(InterPro)
Cec08g0305 671 CDD STK_BAK1_like 354 625 - -
Cec08g0305 671 SUPERFAMILY Protein kinase-like (PK-like) 327 623 IPR011009 -
Cec08g0305 671 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0186 Cec-Chr6:1884957 Cec08g0305 Cec-Chr8:6684058 1.00E-30 dispersed
Cec07g1023 Cec-Chr7:24928270 Cec08g0305 Cec-Chr8:6684058 1.40E-242 dispersed
Cec07g1841 Cec-Chr7:34092787 Cec08g0305 Cec-Chr8:6684058 4.00E-125 dispersed
Cec08g0305 Cec-Chr8:6684058 Cec10g0926 Cec-Chr10:20516035 1.40E-227 dispersed
Cec08g0305 Cec-Chr8:6684058 Cec07g1840 Cec-Chr7:34073170 1.00E-137 transposed
Cec08g0305 Cec-Chr8:6684058 Cec11g0528 Cec-Chr11:5619330 1.00E-137 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72175 PF00069 Pkinase 1.10E-44 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0305 K13418 - csv:101208695 1141.72