Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0347 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCACGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAACGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCAGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTTGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACCATTGCTTCTGTCAAGAACTTTCAACTGATAACTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.22 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLITATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8778268 8780902 - CePI673135_08g003470.1 Cec08g0347 208989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0347 431 CDD F-box_AtTLP-like 53 97 - -
Cec08g0347 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cec08g0347 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cec08g0347 431 FunFam Tubby-like F-box protein 110 431 - -
Cec08g0347 431 Gene3D - 48 101 - -
Cec08g0347 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cec08g0347 431 PANTHER TUBBY-RELATED 48 430 - -
Cec08g0347 431 Pfam Tub family 114 426 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cec08g0347 431 FunFam Tubby-like F-box protein 48 101 - -
Cec08g0347 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cec08g0347 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cec08g0347 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cec08g0347 431 MobiDBLite consensus disorder prediction 366 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1168 Cec-Chr5:10603970 Cec08g0347 Cec-Chr8:8778268 5.90E-192 dispersed
Cec05g2076 Cec-Chr5:32637920 Cec08g0347 Cec-Chr8:8778268 2.90E-116 dispersed
Cec06g0545 Cec-Chr6:6051805 Cec08g0347 Cec-Chr8:8778268 1.20E-108 dispersed
Cec08g0347 Cec-Chr8:8778268 Cec08g0729 Cec-Chr8:19023887 5.40E-201 dispersed
Cec08g0347 Cec-Chr8:8778268 Cec05g0683 Cec-Chr5:5601650 2.70E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30013 PF01167 Tub 2.60E-118 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0347 K19600 - csv:101206041 847.425