Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0347 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCACGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAACGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCAGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTTGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACCATTGCTTCTGTCAAGAACTTTCAACTGATAACTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.22 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLITATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8778268 8780902 - CePI673135_08g003470.1 Cec08g0347 208989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0347 431 CDD F-box_AtTLP-like 53 97 - -
Cec08g0347 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cec08g0347 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cec08g0347 431 FunFam Tubby-like F-box protein 110 431 - -
Cec08g0347 431 Gene3D - 48 101 - -
Cec08g0347 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cec08g0347 431 PANTHER TUBBY-RELATED 48 430 - -
Cec08g0347 431 Pfam Tub family 114 426 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cec08g0347 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cec08g0347 431 FunFam Tubby-like F-box protein 48 101 - -
Cec08g0347 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cec08g0347 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cec08g0347 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cec08g0347 431 MobiDBLite consensus disorder prediction 366 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0347 K19600 - - csv:101206041 847.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1168 Cec-Chr5:10603970 Cec08g0347 Cec-Chr8:8778268 5.90E-192 dispersed
Cec05g2076 Cec-Chr5:32637920 Cec08g0347 Cec-Chr8:8778268 2.90E-116 dispersed
Cec06g0545 Cec-Chr6:6051805 Cec08g0347 Cec-Chr8:8778268 1.20E-108 dispersed
Cec08g0347 Cec-Chr8:8778268 Cec08g0729 Cec-Chr8:19023887 5.40E-201 dispersed
Cec08g0347 Cec-Chr8:8778268 Cec05g0683 Cec-Chr5:5601650 2.70E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0347 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 2.3e-178 622.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT1G76900 69.4 3.7e-168 588.2
Cec05g0683 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 4.6e-110 395.2
Cec05g1168 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cec08g0729 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 2.7e-94 342.0
Cec08g0347 . 173 431 TUB Transcription Factor Family AT1G25280 67.3 1.4e-93 339.7
Cec05g0683 . 154 387 TUB Transcription Factor Family AT1G25280 53.2 5.2e-69 258.1
Cec05g2076 . 289 516 TUB Transcription Factor Family AT1G25280 53.4 5.4e-66 248.1
Cec04g1658 . 176 413 TUB Transcription Factor Family AT1G25280 51.7 5.0e-64 241.5
Cec06g0545 . 154 362 TUB Transcription Factor Family AT1G25280 50.6 1.1e-53 207.2
Cec05g0683 . 98 387 TUB Transcription Factor Family AT5G18680 61.7 1.4e-94 343.2
Cec06g0545 . 98 362 TUB Transcription Factor Family AT5G18680 61.4 2.8e-87 318.9
Cec08g0729 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 3.7e-84 308.5
Cec08g0347 . 112 431 TUB Transcription Factor Family AT5G18680 52.5 1.1e-83 307.0
Cec05g1168 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cec05g2076 . 225 516 TUB Transcription Factor Family AT5G18680 52.2 6.8e-78 287.7
Cec07g1124 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 9.3e-67 250.8
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.4e-139 493.0
Cec05g2076 . 111 516 TUB Transcription Factor Family AT2G18280 59.0 9.9e-125 443.7
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.7e-119 424.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G18280 51.7 8.4e-116 414.1
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 7.1e-115 411.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 3.9e-113 405.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 4.9e-100 361.7
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 1.4e-158 556.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G47900 66.5 3.0e-145 511.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G47900 55.1 3.9e-132 468.4
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 9.5e-131 463.8
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G47900 56.1 6.2e-130 461.1
Cec05g2076 . 120 516 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.2e-114 410.2
Cec07g1124 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 3.9e-100 362.1
Cec09g0343 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 6.5e-73 271.2
Cec08g0347 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cec05g1168 . 66 428 TUB Transcription Factor Family AT1G43640 68.3 8.5e-147 516.9
Cec08g0729 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 1.4e-141 499.6
Cec05g0683 . 49 387 TUB Transcription Factor Family AT1G43640 52.6 3.4e-103 372.1
Cec05g2076 . 178 516 TUB Transcription Factor Family AT1G43640 50.1 1.0e-99 360.5
Cec06g0545 . 49 362 TUB Transcription Factor Family AT1G43640 51.0 1.1e-93 340.5
Cec05g2076 . 144 516 TUB Transcription Factor Family AT1G47270 63.9 8.8e-134 473.8
Cec04g1658 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 7.7e-122 434.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cec08g0729 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.5e-112 401.4
Cec08g0347 . 30 431 TUB Transcription Factor Family AT1G47270 51.3 7.2e-112 401.0
Cec07g1124 . 50 383 TUB Transcription Factor Family AT1G53320 78.0 3.3e-154 541.6
Cec05g0683 . 98 387 TUB Transcription Factor Family AT3G06380 62.8 7.8e-95 344.0
Cec06g0545 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 3.4e-82 302.0
Cec05g1168 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cec08g0729 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cec05g2076 . 229 516 TUB Transcription Factor Family AT3G06380 52.9 6.0e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30013 PF01167 Tub 2.60E-118 CL0395 Cec TF