Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0349 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCCGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGGGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTCGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGCCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCATACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATATCTCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACATCATCGGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCTCCCCCGCCACCGCCACCGTCCCAACAACAACAACCACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCGAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGCCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAATGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGATGACGATGATGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA 1920 47.03 MLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDGRGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLPKPTPPPQPPPHTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINISSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPPSQQQQPPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDEDEEEEDEGGGNYEIVASKPASVSAAE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9266247 9268869 + CePI673135_08g003490.1 Cec08g0349 208991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0349 639 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cec08g0349 639 PANTHER FI21293P1 38 609 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 599 623 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 566 639 - -
Cec08g0349 639 Coils Coil 284 315 - -
Cec08g0349 639 Gene3D - 67 128 - -
Cec08g0349 639 Gene3D - 462 523 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 372 413 - -
Cec08g0349 639 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Cec08g0349 639 FunFam Trihelix transcription factor GT-2 67 128 - -
Cec08g0349 639 FunFam Trihelix transcription factor GT-2 462 523 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 206 228 - -
Cec08g0349 639 PRINTS Proline rich extensin signature 165 181 - -
Cec08g0349 639 PRINTS Proline rich extensin signature 203 215 - -
Cec08g0349 639 PRINTS Proline rich extensin signature 371 396 - -
Cec08g0349 639 PRINTS Proline rich extensin signature 215 236 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 180 205 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 363 416 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 566 591 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 161 179 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 259 280 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 155 228 - -
Cec08g0349 639 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Cec08g0349 639 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Cec08g0349 639 SMART sant 63 125 IPR001005 -
Cec08g0349 639 SMART sant 458 520 IPR001005 -
Cec08g0349 639 CDD GT1 65 130 - -
Cec08g0349 639 MobiDBLite consensus disorder prediction 1 67 - -
Cec08g0349 639 CDD GT1 461 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0118 Cec-Chr1:1029304 Cec08g0349 Cec-Chr8:9266247 4.20E-94 dispersed
Cec01g1097 Cec-Chr1:16969274 Cec08g0349 Cec-Chr8:9266247 2.40E-34 dispersed
Cec02g0077 Cec-Chr2:725182 Cec08g0349 Cec-Chr8:9266247 4.30E-84 dispersed
Cec06g1005 Cec-Chr6:14870775 Cec08g0349 Cec-Chr8:9266247 2.50E-37 dispersed
Cec08g0349 Cec-Chr8:9266247 Cec10g1946 Cec-Chr10:34281072 9.00E-35 dispersed
Cec08g0349 Cec-Chr8:9266247 Cec08g0350 Cec-Chr8:9606595 2.10E-92 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30014 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0349 - - - 0.0