Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0522 ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCAATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGGCTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTCCAGAATCAGATTGAGTTTCTGTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCGCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA 654 41.44 MSSNHLEMMSNHFTVENSNQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGAEIMQATNGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15403935 15409741 + CePI673135_08g005220.1 Cec08g0522 209164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0522 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 176 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec08g0522 217 CDD bHLH_AtBPE_like 90 174 - -
Cec08g0522 217 Gene3D - 97 168 IPR036638 GO:0046983(InterPro)
Cec08g0522 217 MobiDBLite consensus disorder prediction 68 90 - -
Cec08g0522 217 SMART finulus 106 156 IPR011598 GO:0046983(InterPro)
Cec08g0522 217 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Cec08g0522 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 169 IPR036638 GO:0046983(InterPro)
Cec08g0522 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983(InterPro)
Cec08g0522 217 MobiDBLite consensus disorder prediction 64 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1653 Cec-Chr1:31186710 Cec08g0522 Cec-Chr8:15403935 1.40E-37 dispersed
Cec05g1325 Cec-Chr5:13741522 Cec08g0522 Cec-Chr8:15403935 3.00E-31 dispersed
Cec08g0522 Cec-Chr8:15403935 Cec09g0837 Cec-Chr9:7777346 1.10E-27 dispersed
Cec08g0522 Cec-Chr8:15403935 Cec06g1678 Cec-Chr6:30365947 1.90E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30021 PF00010 HLH 6.40E-06 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0522 - - - 0.0