Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0536 ATGGTTTACTCCGACAAAATGCAAGAAATTTCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGATGACTCTGATTTACACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGTGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCTGCTGCGGAAACTAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAACGCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAACTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCGGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACAAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTACAGAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCATCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 53.91 MVYSDKMQEISSKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLHNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKETQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAIAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15915237 15918292 + CePI673135_08g005360.1 Cec08g0536 209178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0536 370 MobiDBLite consensus disorder prediction 126 146 - -
Cec08g0536 370 MobiDBLite consensus disorder prediction 60 77 - -
Cec08g0536 370 MobiDBLite consensus disorder prediction 346 370 - -
Cec08g0536 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Cec08g0536 370 MobiDBLite consensus disorder prediction 126 212 - -
Cec08g0536 370 MobiDBLite consensus disorder prediction 327 370 - -
Cec08g0536 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0536 370 MobiDBLite consensus disorder prediction 60 80 - -
Cec08g0536 370 MobiDBLite consensus disorder prediction 168 193 - -
Cec08g0536 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cec08g0536 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cec08g0536 370 MobiDBLite consensus disorder prediction 194 212 - -
Cec08g0536 370 FunFam Myb family transcription factor 207 265 - -
Cec08g0536 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cec08g0536 370 Gene3D - 207 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0536 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0536 Cec-Chr8:15915237 Cec11g0279 Cec-Chr11:3051600 5.70E-42 dispersed
Cec05g1705 Cec-Chr5:28339997 Cec08g0536 Cec-Chr8:15915237 3.30E-09 transposed
Cec05g2524 Cec-Chr5:36250793 Cec08g0536 Cec-Chr8:15915237 6.10E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec05g1231 . 247 447 G2-like Transcription Factor Family AT5G16560 57.3 1.3e-44 177.6
Cec09g1158 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 1.2e-40 164.5
Cec05g2157 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 6.6e-41 164.5
Cec08g1594 . 54 140 G2-like Transcription Factor Family AT5G42630 85.1 2.6e-37 152.5
Cec05g2524 . 19 256 G2-like Transcription Factor Family AT1G25550 56.5 9.3e-53 204.1
Cec08g0536 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 6.0e-52 201.4
Cec03g0127 . 1 269 G2-like Transcription Factor Family AT3G46640 51.9 2.6e-62 236.1
Cec10g1667 . 5 185 G2-like Transcription Factor Family AT3G46640 50.4 4.9e-37 152.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 3.1e-74 275.4
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT5G05090 53.6 8.9e-69 257.3
Cec05g0383 . 12 314 G2-like Transcription Factor Family AT4G13640 57.7 8.6e-65 244.2
Cec05g0383 . 12 266 G2-like Transcription Factor Family AT3G24120 63.9 1.8e-78 289.7
Cec02g1969 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.3e-40 162.2
Cec07g0267 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Cec09g2389 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cec04g1815 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Cec09g2389 . 1 381 G2-like Transcription Factor Family AT1G79430 55.1 1.7e-86 316.6
Cec02g1969 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Cec05g0383 . 38 202 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cec04g1814 . 102 319 G2-like Transcription Factor Family AT2G01060 65.3 2.1e-53 206.1
Cec04g0650 . 1 301 G2-like Transcription Factor Family AT3G10760 63.3 9.4e-92 334.0
Cec10g1667 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.7e-83 305.8
Cec04g0650 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30022 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cec TF