Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0588 ATGGGCAAAAGGAGCTTGGCAGAGAACAAATCTTGCACTCTTGTTTGCGCTAAATCAACTATAGAGCCATGTTCGAACTCCGATTCTTGCAATGCCCTGCTTGGTTACACTCTTTACACCGACCTCAAGGTTTCTGAAGTTGCTTCGCTCTTTCAAGTCGACCCCATTTCGATTCTCACCGCTAACGCCATAGATGTTTCATACCCAGATGTTGAAAATCACATTCTCCCTTCGCAGCTCTTCATCAAAATCCCCATTTCTTGTTCTTGCGTTGACGGGATTCGTAAGTCGGTTTCGACTCGGTACAAGACTCGTCCATCTGACACTCTCTCGTCGATTGCCGATTCCATCTACGCTGGTTTGGTCTCGTCAGATCAGATTCGGGAGGCTAATTCCATTTCGGACCCTTCTCTTCTCGATGTTGGACAGACCCTTGTTGTGCCGCTTCCTTGTACTTGCTTTAATGGAACTGACAATTCGTTGCCTGCTATTTACTTGTCTTACGTTGTTCAACCTGAAGATACTTTAACTGGGATTGCTTTTAGATATTCGACCACTATCACTGACTTGATGGATGTTAATGCCATGGGCAACCCAGCGATTAAGGCTGGTGATATTTTGGCCGTCCCATTGCCTGCCTGTGCATCTAAGTTTTCTACATATGCCTCTGACTTTGGCTTGATCGTGCCCAATGGGAGCTATGCCATTACGGCGAGTCATTGTGTGCAATGTAGCTGTGGACCAGGGAACCTCAATATGTATTGCATGCCTGCTCCCTTCGCCGTTTCTTGTTCGAGTATGCAATGCAGAAACAGCAATCTAATGCTTGGGAATGACACTGCACAGCACAGTAGTGCAGGTTGCAATGTTACTTCTTGTAGTTATGGTGGTTTTGTAAATGGCACCATTGTCACGACGTTGTCTTCGAATCTTCAGCCTCGATGCCCGGGGCCACAGCAATTTCCCCCACTGAAAGCCCCACCTACGACAGTAATCAGAGATACAAATTTTTCACCTGCACCTGCTCCTCAATTTGATGGCTCTGGATCACCTGCACCCGGATCGGGATTGATCCCTTCAACAACTGGTTCTCTTCCCGGACTTCCACCGGCCAGTGGCCCCATTGGTAGTACTTCTGGGATGAACTCTGCGTCTTCCACTGCTTCCTCATTGATGCTAGATAACAGAGAGCAAAGCACCGGTAGGACCGATGTTATTCAAATGATGCATGTGATCTTCGAGTTCTGA 1248 47.36 MGKRSLAENKSCTLVCAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQVDPISILTANAIDVSYPDVENHILPSQLFIKIPISCSCVDGIRKSVSTRYKTRPSDTLSSIADSIYAGLVSSDQIREANSISDPSLLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVQPEDTLTGIAFRYSTTITDLMDVNAMGNPAIKAGDILAVPLPACASKFSTYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRNSNLMLGNDTAQHSSAGCNVTSCSYGGFVNGTIVTTLSSNLQPRCPGPQQFPPLKAPPTTVIRDTNFSPAPAPQFDGSGSPAPGSGLIPSTTGSLPGLPPASGPIGSTSGMNSASSTASSLMLDNREQSTGRTDVIQMMHVIFEF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17291757 17294727 - CePI673135_08g005880.1 Cec08g0588 209230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0588 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 15 317 - -
Cec08g0588 415 Gene3D LysM domain 156 220 IPR036779 -
Cec08g0588 415 ProSiteProfiles LysM domain profile. 100 147 IPR018392 -
Cec08g0588 415 Gene3D LysM domain 96 155 IPR036779 -
Cec08g0588 415 SUPERFAMILY LysM domain 166 211 IPR036779 -
Cec08g0588 415 SUPERFAMILY LysM domain 100 149 IPR036779 -
Cec08g0588 415 CDD LysM 167 209 IPR018392 -
Cec08g0588 415 SMART LysM_2 167 210 IPR018392 -
Cec08g0588 415 SMART LysM_2 101 148 IPR018392 -
Cec08g0588 415 CDD LysM 100 147 IPR018392 -
Cec08g0588 415 MobiDBLite consensus disorder prediction 375 399 - -
Cec08g0588 415 ProSiteProfiles LysM domain profile. 166 209 IPR018392 -
Cec08g0588 415 Pfam LysM domain 168 210 IPR018392 -
Cec08g0588 415 Pfam LysM domain 102 148 IPR018392 -
Cec08g0588 415 MobiDBLite consensus disorder prediction 314 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0588 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g278 . . . . . . . . Cmo04g02467 Cmo15g00697 . . . . Sed03g0791 . . Bhi04g01920 Tan11g1285 Cmetu03g0754 . Hepe02g2277 . Lcy10g1221 Cla08g00584 Cam08g0999 Cec08g0588 Cco08g0698 Clacu08g0708 . Cre08g0519 Cone4ag1398 Cone7ag1539 . . . . . Cme03g00571 . Blo18g00186 . Bda01g01423 Bpe02g01637 . Bma01g00824 . . . . . . Car04g02284 Car15g00629 Cpe01g02046 . . . . . . . . . . . . . . . Lsi08g00430 . Chy03g00813 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0588 . 17 379 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 75.6 6.1e-157 550.8
Cec08g0588 . 13 379 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 64.3 8.1e-133 470.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37