Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0604 ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCTTTTTCTTCCTCACAACACTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTACTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACAGATCAAATCAATGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGTTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGTATGA 681 39.21 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQHSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQINEEEITTVGIGITDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGV 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17555276 17559325 + CePI673135_08g006040.1 Cec08g0604 209246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0604 226 CDD REC_typeA_ARR 16 151 - -
Cec08g0604 226 Gene3D - 15 224 - -
Cec08g0604 226 ProSiteProfiles Response regulatory domain profile. 15 156 IPR001789 GO:0000160(InterPro)
Cec08g0604 226 MobiDBLite consensus disorder prediction 206 226 - -
Cec08g0604 226 Pfam Response regulator receiver domain 74 149 IPR001789 GO:0000160(InterPro)
Cec08g0604 226 SMART REC_2 14 152 IPR001789 GO:0000160(InterPro)
Cec08g0604 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 205 IPR045279 GO:0009736(InterPro)
Cec08g0604 226 MobiDBLite consensus disorder prediction 189 226 - -
Cec08g0604 226 SUPERFAMILY CheY-like 14 150 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0604 Cec-Chr8:17555276 Cec10g1628 Cec-Chr10:30724162 6.20E-39 dispersed
Cec08g0604 Cec-Chr8:17555276 Cec06g1863 Cec-Chr6:31985770 9.20E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30030 PF00072 Response_reg 3.70E-17 CL0304 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0604 K14492 - csv:101216267 323.939