Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0619 ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCGTCCTCGTTAGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGGCGACTAATACGACCACATTGCTCGATGTCAAAACGACTAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGTGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGCAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAGAGGCCTTCTACAGATTTCATGGAAAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTCCCAGATACTCTATATTTGACAGTGAACTACATTGATCGATACCTATCTGGAAATTCAATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCAAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTGTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACACATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAA 1506 44.56 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLTATNTTTLLDVKTTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDAITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESCVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17738459 17741548 + CePI673135_08g006190.1 Cec08g0619 209261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0619 501 Gene3D - 249 362 - -
Cec08g0619 501 Pfam Cyclin, C-terminal domain 364 485 IPR004367 -
Cec08g0619 501 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Cec08g0619 501 Gene3D - 235 484 - -
Cec08g0619 501 SMART cyclin_7 271 355 IPR013763 -
Cec08g0619 501 SMART cyclin_7 368 457 IPR013763 -
Cec08g0619 501 PANTHER CYCLINS 215 476 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cec08g0619 501 MobiDBLite consensus disorder prediction 1 34 - -
Cec08g0619 501 CDD CYCLIN_AtCycA-like_rpt2 364 479 - -
Cec08g0619 501 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Cec08g0619 501 FunFam Mitotic cyclin 6 249 349 - -
Cec08g0619 501 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Cec08g0619 501 MobiDBLite consensus disorder prediction 1 32 - -
Cec08g0619 501 FunFam Cyclin A1 352 484 - -
Cec08g0619 501 SUPERFAMILY Cyclin-like 364 491 IPR036915 -
Cec08g0619 501 PIRSF Cyclin_A_B_D_E 5 495 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cec08g0619 501 SMART Cyclin_C_2 364 488 IPR004367 -
Cec08g0619 501 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g2257 Cec-Chr5:33994556 Cec08g0619 Cec-Chr8:17738459 4.80E-82 dispersed
Cec07g0609 Cec-Chr7:8190129 Cec08g0619 Cec-Chr8:17738459 1.10E-15 dispersed
Cec08g0619 Cec-Chr8:17738459 Cec08g1681 Cec-Chr8:28093077 1.50E-77 dispersed
Cec08g0619 Cec-Chr8:17738459 Cec09g0240 Cec-Chr9:2086511 1.50E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0619 K06627 - csv:101221569 900.197