Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0624 ATGAGAATTTGTAGCCATCGAAGAAATAAACTTACACTATGTAGATTGTTAGCTAGGTTGTACAGTTCTGGTGAACAAACTGATACGGTGTCGGATTCAATCAGAAGTATATGTAAAACCATGATGACATGCCAAACGCTGGCGCTTGAGACTGCCCTTGACCAAAATGGGATTAGGATTTCACCTGAGATAGCTGAGGCTGTCCTCAAAAAATTTGAGAATGCCGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAGCGAAACTATGTCCATAGTGTGAGGGCTTACCACTCTATGATCGAGTCTTTAGCTAAGATTAGGCAGTACCAGTTGGTGTGGGATCTGGTGAATGCTATGAGGAATAAGGAGATTCTAAATGTTGAGACGTTTTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAGCAGTTTATACATTTAATGTCATGGAAAAATATAATATGAAACCAAATGTAGCTGCATTTAATGGATTGCTGAGTGCTCTGTGCAAATCTAAGAACGTGAGGAAGGCTCAGGAAATTTTTGACAGTATGAAGGACCAATTTGTTCCTGACTCAAAAACTTACAGCATACTCATTGAAGGATGGGGGAGGGCTCCAAATCTTCCAAAGGCAAGGGAGATTTTTAGAGAAATGATTGATAGCGGCTGCATTCCCGATATAGTGACATATAGCATTATGGTTGATGTTCTTTGCAAGGCCGGAAGAGTGGATGAAGCAGTTGAGATTGTAAAAGAAATGGATTCTAATAATTGTAAACCATCATCGTTTGTCTATAGTGTTTTGGTACATACATATGGCGTAGAAAATCGGATTGAGGATGCAGTCTCTACATTCTTGGAGATGGAAAGAAATGGAGTTATGGCTGATGTGGTGGCATATAATGCTTTAATCACTGCTTTCTGTAAAGCAAACAAGATTAAGAATGTTTATAGGGTGTTGAAGGACATGGACTTAAAGGGTGTTAGCCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCCGTGGTGAGACAGATGAGGCATTTAGGATCTTTCGTAGGATGGTCAAAGTGTGTGAACCAGATGTAGACTCCTATACCATGATCATAAAAATGTTTTGTGGGAGGAAGGAGCTTCATATGGCTCTTAAAGTCTGGCAGTATATGAAGAAGAAGCAGTTTGTTCCAAGCATGCACACATTTTCTGTTCTTATTAATGGACTGTGTCAGATAGGCAATGCTACACAAGCTTGTGTGTTGTTGGAAGAGATGATAGAGAAGGGAATCCGACCTTCTGGTGTCACATTCGGAAGGTTGAGACATTTATTAATTAAGGAAGGCAGAGAAGATGTTCTAAAATTTCTGCAGGAGAAAATGAATTTGCTAGTCAAGGAGCCATTAATTGATTGA 1440 39.51 MRICSHRRNKLTLCRLLARLYSSGEQTDTVSDSIRSICKTMMTCQTLALETALDQNGIRISPEIAEAVLKKFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQLVWDLVNAMRNKEILNVETFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDSMKDQFVPDSKTYSILIEGWGRAPNLPKAREIFREMIDSGCIPDIVTYSIMVDVLCKAGRVDEAVEIVKEMDSNNCKPSSFVYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVVAYNALITAFCKANKIKNVYRVLKDMDLKGVSPNSRTCNIIINSLIGRGETDEAFRIFRRMVKVCEPDVDSYTMIIKMFCGRKELHMALKVWQYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGVTFGRLRHLLIKEGREDVLKFLQEKMNLLVKEPLID 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17800657 17802096 + CePI673135_08g006240.1 Cec08g0624 209266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0624 479 SUPERFAMILY TPR-like 94 436 IPR011990 GO:0005515(InterPro)
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Cec08g0624 479 Pfam PPR repeat 229 260 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 341 367 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 132 165 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 409 442 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 271 303 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 375 407 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 167 194 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 201 234 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 305 338 IPR002885 -
Cec08g0624 479 NCBIfam pentatricopeptide repeat 235 268 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Cec08g0624 479 Gene3D Tetratricopeptide repeat domain 38 192 IPR011990 GO:0005515(InterPro)
Cec08g0624 479 Gene3D Tetratricopeptide repeat domain 193 262 IPR011990 GO:0005515(InterPro)
Cec08g0624 479 Pfam PPR repeat family 163 208 IPR002885 -
Cec08g0624 479 Pfam PPR repeat family 371 420 IPR002885 -
Cec08g0624 479 Pfam PPR repeat family 303 349 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 194 IPR002885 -
Cec08g0624 479 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 14 367 IPR050667 -
Cec08g0624 479 Pfam PPR repeat 271 300 IPR002885 -
Cec08g0624 479 Pfam PPR repeat 132 160 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 368 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Cec08g0624 479 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Cec08g0624 479 Gene3D Tetratricopeptide repeat domain 263 351 IPR011990 GO:0005515(InterPro)
Cec08g0624 479 Gene3D Tetratricopeptide repeat domain 352 475 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0624 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g1710 Cec-Chr5:28426942 Cec08g0624 Cec-Chr8:17800657 1.20E-29 dispersed
Cec08g0624 Cec-Chr8:17800657 Cec09g1059 Cec-Chr9:10307293 2.70E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32