Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0644 ATGGATTCAAATAGCTCTCAATTAGAGTCCCGAGAGCAAGCACCCAATCAACAACTTCCTTTTCTCCACACTTCCCAATCAACCCATAAAACCCTCTTCATACCTTCAAAATTCATTTGGCCAAAAGGGGATTTAGTAGAAGCTTATGAAAAGCTGAGTGAACCACATGTCGACCTTGAGGGCTTCCTCAAGGGCGATAAAAAGGCAACCATTGAAGCCTCCAAGATCGTAAGGAAAGCCTGCTTGAAACATGGCTTCTTCCAAGTTACGAACCATGGTGTCGATCAAAATCTGTTAGCCACTGCCCTTGATAAAATGGGCCCTCTTTTTAACCTTCCTTTGAGTCTTAAGACTAGGGCTTCCCAAGCCCGGGCTGCCAAAATCTCCAATAATGAACCACCTGTTGTTCATTTCTTCTCTTCCACTTTGGGCAAGGAATTTGAAGAAATAGGGGTTGTATATGAAAAGTACTGCGAAGCAATGAGGGAGCTATCACTAGCATTAACGGAGGTTTTGGGGATAAGTTTGGGAGTGGAGAGATCATATTTCCGCAAGTTTTTCGAAGATGGAAGGTCCATAATGCGATTGAACAGTTACCCAATTTGCGAACAAGGCGGCGTAGCCCTTGGCACTGGCCCTCACTGTGATCCAACAGCCTTGACTATCCTCCACCAGGATCAAGTCGGTGGCCTCCAAGTCTTCGCTAACAACAAATGGCATACTGTTCCTCCCTCTCCAAATTCACTCGTTGTTAACATTGGTGATGTTTTCATGGCGCTGTGTAATGGAGAATACAAAAGCTGCGTGCATAGGGCGGTGGTGAACAAGCACAAGGAGAGGAGGTCATTGGCATTTTTCCTTTGTCCGAGGAAAGACAAGGTGGTGAGGCCGCCGGAGAAACTTGTTGCCGGCGACGGGTCAAGAAAGTATCCGGATTTTTCCTGGTCGGAGTTGTTTGAATTCACACAAATGCACTACAGAGCTGATGCTGTAACTCTTCAAAACTTCAGCAAATGGGTGGTGTCATCGAGGCCATGTGGTGTTTAA 1047 46.04 MDSNSSQLESREQAPNQQLPFLHTSQSTHKTLFIPSKFIWPKGDLVEAYEKLSEPHVDLEGFLKGDKKATIEASKIVRKACLKHGFFQVTNHGVDQNLLATALDKMGPLFNLPLSLKTRASQARAAKISNNEPPVVHFFSSTLGKEFEEIGVVYEKYCEAMRELSLALTEVLGISLGVERSYFRKFFEDGRSIMRLNSYPICEQGGVALGTGPHCDPTALTILHQDQVGGLQVFANNKWHTVPPSPNSLVVNIGDVFMALCNGEYKSCVHRAVVNKHKERRSLAFFLCPRKDKVVRPPEKLVAGDGSRKYPDFSWSELFEFTQMHYRADAVTLQNFSKWVVSSRPCGV 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18159741 18163180 - CePI673135_08g006440.1 Cec08g0644 209286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0644 348 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 289 IPR005123 -
Cec08g0644 348 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 123 IPR026992 -
Cec08g0644 348 SUPERFAMILY Clavaminate synthase-like 33 328 - -
Cec08g0644 348 FunFam Gibberellin 20 oxidase 2 122 327 - -
Cec08g0644 348 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 34 319 IPR050231 GO:0009416(PANTHER)|GO:0009686(PANTHER)|GO:0009826(PANTHER)|GO:0009908(PANTHER)|GO:0016706(PANTHER)|GO:0045544(PANTHER)
Cec08g0644 348 MobiDBLite consensus disorder prediction 1 22 - -
Cec08g0644 348 Pfam 2OG-Fe(II) oxygenase superfamily 192 289 IPR044861 -
Cec08g0644 348 Gene3D - 24 325 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0644 K05282 - - csv:101209625 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1205 Cec-Chr4:31611910 Cec08g0644 Cec-Chr8:18159741 7.10E-101 dispersed
Cec05g0920 Cec-Chr5:7990318 Cec08g0644 Cec-Chr8:18159741 1.30E-81 dispersed
Cec06g0022 Cec-Chr6:250635 Cec08g0644 Cec-Chr8:18159741 1.60E-79 dispersed
Cec08g0644 Cec-Chr8:18159741 Cec10g0077 Cec-Chr10:756897 1.30E-24 dispersed
Cec08g0644 Cec-Chr8:18159741 Cec01g0533 Cec-Chr1:5452881 2.60E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24