Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0645 ATGGGGCGTTCAATGGAGACGCTTATTCTACTGACCGTGGTGAAAATAGCCATCATATCAAGCGTTTTTGTCATGGCGGCGACAGCGGCGGTAGCTTCTCAAGCCTTACCCGGGTGCGATGAATGGTGTGGTGACGTGCAAATTCCATATCCATTCGGGACGAGGGAAGGGTGTTATCTGAATGAAACATTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAACGGGCGGCAACGTTAATGTTACAAATATATCAATCTCGGGGGAGCTCCAAATCTTGAACTTAATGGCCCAAGATTGCTACCCGCCAAAAATTGGTCCTGATGTTTTTTCCTCTATCTTTCTCCATATACCTGGGTACACTATTTCCAGTACTAAAAACAAGTTCATTGCTATGGGCTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCAAAGAAGACCAGTCCTTCACAACTGCATGTGTGGCATTGTGTGATGACATTAGCTCGGTTAAAGATGGTGCATGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCCAGTGGCCTTCATTATTTGGAAATTCAGGTTAGCAGCTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGTTATGCGTTTGTAATTGAACAACACAAGTTCAACTTCTCCTCCAACTATATACGCAATTTTCCTCAAAACAGAATTTCGGCAGTGCTTGATTGGGCCATTACTAACACTACATGCGTAACGGCTAAGAACAAAACTAATTGTATATGTGGCCCATATAGCACAAAGGTTGACTTGCTCGATGATAAATCTCAATATCTTTGCCAGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAAGTCTAAATGAGTGCAAGTATGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTTAAAGGAGATGGAAGACGTGGAGGAGAAGGTTGCACCCGAAACGCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTGCATGGTTATACTTGGGTTACAAAAAGTGGAAGTTCATTAAACTGAAGGAGAAGTTTTTTCAGAACAATGGCGGTTTAATGCTTCAACAACATCTTTCTCAATGGCAGTCATCCACTGACATGGTTAGAATTTTCACCCAAGAGGAGCTGGACAAGGCTACAAACAAGTACGACGAAAGTGCAGTGGTCGGAAAAGGTGGTTACGGTACTGTTTACAAAGGAGTCTTAGATGATGGTTCGGTAGTCGCAATTAAGAAATCAAAATTGGTAGACCAATCTCAAACTTCTCAATTCATTAATGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTATGAGTTCATCGCCAACGGCACACTTTACGACCACGTCCATGGAAAAGCCAACCAAGATTCTCTTCCATGGGAAGCTCGTTTGAGAATAGCTTCCGAAACAGCAGGGGTTATTTCATATCTTCATTCTTCAGCTTCCACTCCAATTATCCACAGAGATATCAAGACAACCAACATACTTTTAGACCATAATTACACTGCAAAAGTATCTGATTTCGGGGCTTCCAAGTTGGTCCCAATGGATCAAACTCAATTATCCACGATGGTGCAAGGAACGCTTGGATATTTAGACCCTGAATATTTGTTAACGAGCGAGTTGACCGAGAAGAGCGACGTGTACAGTTTTGGAATAGTACTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGATGGAAGCTAACGTTGGGCAGATAAAAGAGGCGGCAAAGTTAGCAACAAAGTGTTTGGGAATGAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTTAAAGGGCTGATTGAGGCTAATGAGAAATTGGAGAGCACAGGAGAGGCGATGGTGGGTTATTTGGTGCAATCCGATGGAGGTTCAGAATCAACATCCAACCAGTTTACTGCAAGTGGGAGCACTAATGTTGTGGATGATAGTATGAAGGTCGAGATTTTGCCACTCATGCATCATGGAAGATAA 2265 43.44 MGRSMETLILLTVVKIAIISSVFVMAATAAVASQALPGCDEWCGDVQIPYPFGTREGCYLNETFFIECNTTHYDSPKAFLTGGNVNVTNISISGELQILNLMAQDCYPPKIGPDVFSSIFLHIPGYTISSTKNKFIAMGCDTLGFISGQSKEDQSFTTACVALCDDISSVKDGACSGNGCCQLEIPSGLHYLEIQVSSLSNHTNVSSFNPCGYAFVIEQHKFNFSSNYIRNFPQNRISAVLDWAITNTTCVTAKNKTNCICGPYSTKVDLLDDKSQYLCQCLEGFEGNPYLPQGCQDIDECKDESLNECKYECVNTIGNYTCNCPKDFKGDGRRGGEGCTRNAKSFVQIIVGVTVGFTVLVIGSAWLYLGYKKWKFIKLKEKFFQNNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYDESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFIANGTLYDHVHGKANQDSLPWEARLRIASETAGVISYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMAMEANVGQIKEAAKLATKCLGMRGEERPSMKEVAMELEGLKGLIEANEKLESTGEAMVGYLVQSDGGSESTSNQFTASGSTNVVDDSMKVEILPLMHHGR 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18178303 18181735 + CePI673135_08g006450.1 Cec08g0645 209287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0645 754 CDD STKc_IRAK 427 694 - -
Cec08g0645 754 SMART egfca_6 297 340 IPR001881 GO:0005509(InterPro)
Cec08g0645 754 SUPERFAMILY EGF/Laminin 296 332 - -
Cec08g0645 754 Pfam Protein tyrosine and serine/threonine kinase 426 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0645 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 705 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cec08g0645 754 FunFam Wall-associated receptor kinase 2 391 496 - -
Cec08g0645 754 CDD EGF_CA 297 331 - -
Cec08g0645 754 Pfam Wall-associated receptor kinase galacturonan-binding 39 94 IPR025287 GO:0030247(InterPro)
Cec08g0645 754 Gene3D Phosphorylase Kinase; domain 1 392 496 - -
Cec08g0645 754 ProSiteProfiles EGF-like domain profile. 297 331 IPR000742 -
Cec08g0645 754 Gene3D Plasmodium vivax P25 domain 236 345 - -
Cec08g0645 754 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
Cec08g0645 754 SMART serkin_6 421 698 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0645 754 Gene3D Transferase(Phosphotransferase) domain 1 497 711 - -
Cec08g0645 754 ProSiteProfiles Protein kinase domain profile. 421 694 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0645 754 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 313 324 IPR000152 -
Cec08g0645 754 FunFam Wall-associated receptor kinase 2 497 712 - -
Cec08g0645 754 SUPERFAMILY Protein kinase-like (PK-like) 399 691 IPR011009 -
Cec08g0645 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0645 754 FunFam Fibrillin 2 292 335 - -
Cec08g0645 754 ProSitePatterns Calcium-binding EGF-like domain signature. 297 322 IPR018097 GO:0005509(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0645 Cec-Chr8:18178303 Cec08g0647 Cec-Chr8:18209730 1.00E-263 dispersed
Cec08g0643 Cec-Chr8:18127068 Cec08g0645 Cec-Chr8:18178303 6.40E-274 proximal
Cec08g0645 Cec-Chr8:18178303 Cec08g0646 Cec-Chr8:18190066 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72182 PF07714 PK_Tyr_Ser-Thr 1.80E-48 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0645 - - - 0.0