Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0646 ATGAGGCGTCCAATGGAGACGCTTGTGCAACTTACAGCAGTGAAAATAATAGCCATCTTATCAGCGGCTTTTGTCGTCGTAGCGGCCACAGCGAACACAACCGTGACATTAGCTTCAAAAGCCTTACCTGGGTGCGACGAATGGTGCGGCGACGTGCAGATTCCATATCCGTTCGGAACGAGGAAAAGGTGTTATCTAAATGAAATGTTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAGGGAGCGGTAACCTTAATGTTACAGATATATCCATCTCGGGGGAGCTCCAAATCATGTACCCCGCGGCCCAAGATTGCCACCCTCCAAATATTGGTCCTGATGTTTTTGCCTCCATCTTTCTCGATGTACCTGCCTACACTATTTCCAGTTCCAAAAACAAGTTCATTGCTATCGGCTGCGATACTTTGGCTGGTTTTTCCGGTCACGACCCAGAAGGGCAAATCTTTAGAACTGCATGTGTGGCGTTGTGTCATGATATTAGTTCTGTTAAAGATGGGGCATGCTCTGGCAATGGGTGCTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAGTTTACGGTCAACAGTTTAAACAATCACATTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCCTTTGTAATTGAACAAAACAACTTCAACTTCTCTTCAAAGTACATCCGCAATTTTCCTGAAAAGAGAATTTCGGGAGTGCTTGATTGGGCCATTAGTAACACAACTTGTGTAACGGCACAGAACAAAACTAATTGTATATGTGGCTCAAATAGCACAAAGGTTGACTTGCTTGATGGTCGATCTCAATATCGTTGCCAGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTCCCCCAAGGTTGTCAAGATATTGACGAGTGCAAGGACGAAAGACTTCACGACTGCAGGTTTGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTCAAAGGAGATGGAAGACGTAGGGGAGAGGGTTGCACCCGAAAATCCAAGTCTTTTGTTCAAATCATTGCCGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAATTTTTTGAGAACAATGGTGGTTTGATGCTTCAACAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTTTCCCAAATCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTAGAGACAGAAGTTCCATTGTTGGTGTATGAGTTCATCGCCAACGGCACACTTTACGAATATGTCCATGATAAAACCAATGATCGTCATTCCCTTTCATGGGAAGCTCGTTTGAGAATAGCTTCAGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTATACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCAAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTAGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCTAACGTTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAAAAATTAGAGAGCACAAGAGAGGAGATGATGGGTTATTTGGTGCAATCAGATGGAGGTTCAGAATCAACATCCAACCAATTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2286 43.39 MRRPMETLVQLTAVKIIAILSAAFVVVAATANTTVTLASKALPGCDEWCGDVQIPYPFGTRKRCYLNEMFFIECNTTHYDSPKAFLGSGNLNVTDISISGELQIMYPAAQDCHPPNIGPDVFASIFLDVPAYTISSSKNKFIAIGCDTLAGFSGHDPEGQIFRTACVALCHDISSVKDGACSGNGCCQLEIPSGLNYLEFTVNSLNNHINVSSFNPCGYAFVIEQNNFNFSSKYIRNFPEKRISGVLDWAISNTTCVTAQNKTNCICGSNSTKVDLLDGRSQYRCQCLEGFEGNPYLPQGCQDIDECKDERLHDCRFECVNTIGNYTCNCPKDFKGDGRRRGEGCTRKSKSFVQIIAGVTVGFTVLVIGSTWLYLGYRKWKFIKLKEKFFENNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIANGTLYEYVHDKTNDRHSLSWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPIDQSQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANVGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTREEMMGYLVQSDGGSESTSNQFTASGSTNAVDDSMKVHILPLIHNGR 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18190066 18193687 + CePI673135_08g006460.1 Cec08g0646 209288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0646 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0646 761 FunFam Wall-associated receptor kinase 2 503 720 - -
Cec08g0646 761 Pfam Wall-associated receptor kinase galacturonan-binding 45 100 IPR025287 GO:0030247(InterPro)
Cec08g0646 761 SUPERFAMILY EGF/Laminin 302 339 - -
Cec08g0646 761 Gene3D Plasmodium vivax P25 domain 244 352 - -
Cec08g0646 761 Gene3D Transferase(Phosphotransferase) domain 1 503 722 - -
Cec08g0646 761 FunFam Fibrillin 2 298 341 - -
Cec08g0646 761 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524(InterPro)
Cec08g0646 761 CDD STKc_IRAK 433 701 - -
Cec08g0646 761 ProSitePatterns Calcium-binding EGF-like domain signature. 303 328 IPR018097 GO:0005509(InterPro)
Cec08g0646 761 SMART serkin_6 427 705 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0646 761 CDD EGF_CA 303 337 - -
Cec08g0646 761 SUPERFAMILY Protein kinase-like (PK-like) 405 699 IPR011009 -
Cec08g0646 761 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Cec08g0646 761 Pfam Protein tyrosine and serine/threonine kinase 431 698 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0646 761 Gene3D Phosphorylase Kinase; domain 1 398 502 - -
Cec08g0646 761 SMART egfca_6 303 346 IPR001881 GO:0005509(InterPro)
Cec08g0646 761 ProSiteProfiles Protein kinase domain profile. 427 705 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0646 761 FunFam Wall-associated receptor kinase 2 397 502 - -
Cec08g0646 761 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 714 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Cec08g0646 761 Pfam Calcium-binding EGF domain 303 335 IPR049883 -
Cec08g0646 761 SMART egf_5 255 302 IPR000742 -
Cec08g0646 761 SMART egf_5 306 346 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0236 Cec-Chr6:2515769 Cec08g0646 Cec-Chr8:18190066 4.20E-37 dispersed
Cec08g0646 Cec-Chr8:18190066 Cec08g0648 Cec-Chr8:18232063 1.60E-251 dispersed
Cec11g0897 Cec-Chr11:12076349 Cec08g0646 Cec-Chr8:18190066 3.00E-65 dispersed
Cec08g0645 Cec-Chr8:18178303 Cec08g0646 Cec-Chr8:18190066 0.00E+00 tandem
Cec08g0646 Cec-Chr8:18190066 Cec08g0647 Cec-Chr8:18209730 1.40E-263 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72183 PF07714 PK_Tyr_Ser-Thr 1.20E-48 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0646 - - - 0.0