Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0655 ATGGGCGATATTACGACGAAATTCCCAAGAAAACCTACCCATAGCCCAGATCCTATCCCACGAACAGCCGCTTCCTATTATAAATCTCCAGAACAGGATTCCACTTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTCGACGATGACTCTCAATCGGAATCGGGGGTTTGTTCACCCACGCTTTGGGGTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCTCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTCTCTCTCAAAGATCTCGTTGAACATCACTTGACTAATTCGAAACGTCAACAAGACGGTGACTCTGCTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCGTAGCAAGAACCGGAGTGAAACTAGGGCACTTGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTCGGCCAGGTTTCGGCTAAAAAGAAGAGTAATCTTAGAGCCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCGCCGAAGCCACCACCGGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTGGCTGGCGGCGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGATCCGACCCATCGGCCCACTTTGGCTTTCGAGTTGACGTTGTCAACAAGTTTACTATGCCATTCATGTCGTGGACTCGTAAACAAAGTGGGAACCAATGGCCGGTAGTCTTAGTCCAGCACGAAAACGCGTTTACTGAACCCTTCCCTTTAGCTTCCTTTGTCGCCATTTGGCAGATGGAATTTATGGAATTTCCTCTATCACGGGGTCTCCGATATTGGGGTAAATTTGCTTTTGCTTTAGTTTTTCTGCTTTATGGGTTGCTTCGTCATGAGATTCAAGGACAGAAGGGCTTATTTGGGTGCAAAAGAATCAGAGGGATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCTACAAATGATGTGCTTATCGCTCCCGATTGGGCGATAAATATTGAGCTCTGTGATATTATTAACATGGATCATAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTCGCTAGCAAAAATCCTAAAATACAACTTCTAGCGCTCTATGTATTAGAGGCTGTAAGCAAAAATTGTGGCGATACTGTTTTTAAGCTGATTGTAGATCGTAATATACTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCCTGATTCAACTGTACGGGACAAAATATTAGCTTTGGTAGATGCATGGCAAGCAGCCTTTGGTGGTGGCCCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATACTGGATTTCAATTTCCACCTAGAGAAGAGAACGTTGGGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCAATGAGCACCCTGTTTCAGCCAGTTATGATGATCTTGCTGTTCGGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTAGCAGATGTTCTATTGGAAATGCTCGGTGCGCTGGACCCTAAGACTCCCGAGGCTTTGAAGCAAGAAGTGATCGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTCGTGATACTTGTGAATGAGACGACAGATGAGGAACTATTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCACGATGACATTGCTAAAGGAACATTTGTGACGGAAGCTGGAAGAGCAGAACCTCCCGTTCCATCGGTTCCATATATCAACCCTGAGGACGATGAGTCGGAAGATGAATTCACACCGTTATCTCGCAGGCCAACGAGAGATCACGTTTATGAAAGGGACAGGAAACTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCAAATAAGTCGGCTGGTGCTGACATGATGGATCATCTTAGCGGCGACATGTACAAACCTGAAGAGTCTCCAAGGATAGTTGAGCCACCATCAACTTCTTCTTCTTCACCTTTCTACACTAGACAGCCTTTGTTCGATGAACCACCTCCAAGAAGCATACCCACCAATACACTCCCGGCAACACCTTGGGACGCTCAATCTCCGAGTGCCCTCCCTCCCCCACCCTCAAGACATAATCAAAGACAACTATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACACCATAGTTGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCTGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2559 47.09 MGDITTKFPRKPTHSPDPIPRTAASYYKSPEQDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWGSNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDSASLSRDDSSSETSFRRDRSKNRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRADSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRSDPSAHFGFRVDVVNKFTMPFMSWTRKQSGNQWPVVLVQHENAFTEPFPLASFVAIWQMEFMEFPLSRGLRYWGKFAFALVFLLYGLLRHEIQGQKGLFGCKRIRGMSTNAAACAERATNDVLIAPDWAINIELCDIINMDHRQAKDALKILKKRLASKNPKIQLLALYVLEAVSKNCGDTVFKLIVDRNILHEMVKIVKKKPDSTVRDKILALVDAWQAAFGGGPKGKYPQYYAAYNELKNTGFQFPPREENVGQFFSPPQIQPVNEHPVSASYDDLAVRVSLQSDSSGLSLPEIQNAQGLADVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFVTEAGRAEPPVPSVPYINPEDDESEDEFTPLSRRPTRDHVYERDRKLANGQSSRVSPLPSPSSNKSAGADMMDHLSGDMYKPEESPRIVEPPSTSSSSPFYTRQPLFDEPPPRSIPTNTLPATPWDAQSPSALPPPPSRHNQRQLYFEQQKAVTGGTQPHLSNDYSSYDTIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18283238 18291108 - CePI673135_08g006550.1 Cec08g0655 209297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0655 852 CDD VHS 374 500 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 639 779 - -
Cec08g0655 852 FunFam TOM1-like protein 2 368 516 - -
Cec08g0655 852 Pfam VHS domain 373 501 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cec08g0655 852 MobiDBLite consensus disorder prediction 663 685 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 686 705 - -
Cec08g0655 852 ProSiteProfiles GAT domain profile. 545 633 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cec08g0655 852 Pfam GAT domain 561 634 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cec08g0655 852 SUPERFAMILY ENTH/VHS domain 372 507 IPR008942 -
Cec08g0655 852 SMART VHS_2 369 502 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cec08g0655 852 MobiDBLite consensus disorder prediction 230 261 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 725 739 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 52 92 - -
Cec08g0655 852 SUPERFAMILY GAT-like domain 516 634 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 127 166 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 50 92 - -
Cec08g0655 852 ProSiteProfiles VHS domain profile. 376 506 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cec08g0655 852 MobiDBLite consensus disorder prediction 145 165 - -
Cec08g0655 852 Gene3D - 363 524 IPR008942 -
Cec08g0655 852 Gene3D - 542 638 IPR038425 -
Cec08g0655 852 MobiDBLite consensus disorder prediction 197 261 - -
Cec08g0655 852 PANTHER TOM1-LIKE PROTEIN 365 849 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cec08g0655 852 CDD GAT_GGA-like_plant 553 631 - -
Cec08g0655 852 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0655 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0328 Cec-Chr8:7644771 Cec08g0655 Cec-Chr8:18283238 2.50E-32 dispersed
Cec08g0655 Cec-Chr8:18283238 Cec11g0839 Cec-Chr11:10426196 6.60E-150 dispersed
Cec08g0655 Cec-Chr8:18283238 Cec08g1269 Cec-Chr8:24660337 4.20E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76