Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0682 ATGGTTGAATCCTCCAGTAGATCAGGGAAGATGTGGTTACTGAATTTAAGCAGTGAAGCAGCACCTAACTTCAGCTGGACAATTATCAGTGCTGGTGTATTCGTCCTTGTTGCACTTGTTCTTTCCACGTTTCTCATCATTGAACATTTAGCTTCTTATAATCAACCAGAGGAACAAAAGTTTTTGATTGGTCTGATATTGATGGTTCCTGTTTACTCTCTAGAATCGTTCCTGTCATTGTTAAATTCAAATGGTGCATTCAACTGTGAAGTGATACGGGACTGCTATGAGGCATTTGCATTATATTGCTTTGAAAGATACCTTATTGCTTGCTTGGGTGGTGAGAAACGTACACTTGAATTCATGGAAAGTCAGACTGTTGTTAACTCTAGCACACCTCTTTTGGCGGAAAAATATGCATATGGGGTTGTAGAACATCCTTTTCCCTTAAATTGCTTCATAAGGGATTGGTATCTTGGTTCTGACTTCTATCATGCGGTGAAAATTGGTATTGTTCAATATATGATATTGAAGATGATATGTGCGCTCCTAGCAATGATTCTTGAAAGTTTCGGGGTCTATGGAGAAGGAAAGTTCGAGTGGAGATGTGGTTATCCCTATTTGGCGGTTGTACTTAATTTTAGTCAGTCGTGGGCCCTATATTGCCTTCTCCAATTCTATTCTGTCACGAAGGACAAATTGGAATCAATTAAACCATTGGCAAAGTTTCTTGTGGTCAAGTCAATCGTTTTCCTCACTTGGTGGCAAGGTGTTGCCGTTGCCTTTCTTTTCTCAATAGGAGCTTTTAAAGGGTCCTTGGCTCGGGAGCTAAAGACACGCATACAAGATTATCTGATATGTATTGAGATGGGTATTGCAGCCGTTGCACATGTTTACACCTTTCCAGCAGTACCTTATAAACGTGGAGAAAGATGTGTTCGTAACGTTGCGGTGCTGTCTGACTACGCGGCCCTAGGAACGCCACCAGATCCAGAGGAGGTTAGAGACTCTGAACGAAGAACTAAAATACGCTTGGGTCGTCAAGATGAGAGAGAGAAGCGTTTGAATTTTCCTCAAAGTGTTCGAGATGTTGTCATTGGAAGCGGTGAAATTATTGTTGATGACATGAAGTATACAGTCACACACGTAGTAGAACCAGTTGAAAGGGGGATTGCAAAACTTAACAAAACGATCCATCGGTTCTCTGAAAACGTTAAACGGCATGAAGAGCAACGGAAGAGTGCCAAGGATGACAGCCATCTGATTCCTTTGAATTCCTGGTCAAAAGAATTTTCTGAAGTCGAAGAAAATCTTAACCAAGGCAGCGTAAGTGACAGTGGAATCTCCAATGATGCCATTGCCCTCTCACCCACAAAGGATTTCACAATGGCCTCGGGGGAAGAGAAGTATCGTTCGCTTTTGCGTGGAGATGAAGAGAAGAACACCAAATGGAGATATGGGGTTCCTCCTAACTATGATGTTGTCAACAAACTCTTTGAAGAAGAGAGGACTAAAGTATGGCCTGTTGGGTCACTTGAAGAGAGGGTGCAAAGCCTAGTGAAGAATTTTGAGATGGAAATGTTCCATAAGATATCACGCAGTGACTTCAAAACAATAGATTTAAACAAGTACACTTTCAGTCTTAATGGAAGAAAGCCTTTAGCTGTTGAAGAAGTAAGTAAACTTGGAGGTTACAATCCCTTCCTTCAAACCTCCCTCCCTGAGGAGTATAGGTACTATAATGCTGCAGAGGAGACTGCCGAATCATCTCATCGAGCTTTCACCGCGACGTTCCTTAGAGGTTTTGCTCTTGAGATTATCCAAGTTTATTCAGGGCCCCCAAATATTGTGTTCAAGTTCAGGCATTGGGGTTACATGGAGGGGCCTTTCAAAAGTCATGCCCCCACTGGGGAGAGAGTTGAATTCTATGGAGTCGCTATTTTTAAGGTGAACGAGAAAGATAAAATTGAGGGGGTGGAATTCTTTTTTGACCCCGCGGAATTGCTTGGAAAACTCCTGAAAGGTCCTGGCTTGGATGGCTCGGTTGAAAAGGCAGTTTCGAGCTGCCCCGTCTTGAGAAACACAGGATAG 2091 42.61 MVESSSRSGKMWLLNLSSEAAPNFSWTIISAGVFVLVALVLSTFLIIEHLASYNQPEEQKFLIGLILMVPVYSLESFLSLLNSNGAFNCEVIRDCYEAFALYCFERYLIACLGGEKRTLEFMESQTVVNSSTPLLAEKYAYGVVEHPFPLNCFIRDWYLGSDFYHAVKIGIVQYMILKMICALLAMILESFGVYGEGKFEWRCGYPYLAVVLNFSQSWALYCLLQFYSVTKDKLESIKPLAKFLVVKSIVFLTWWQGVAVAFLFSIGAFKGSLARELKTRIQDYLICIEMGIAAVAHVYTFPAVPYKRGERCVRNVAVLSDYAALGTPPDPEEVRDSERRTKIRLGRQDEREKRLNFPQSVRDVVIGSGEIIVDDMKYTVTHVVEPVERGIAKLNKTIHRFSENVKRHEEQRKSAKDDSHLIPLNSWSKEFSEVEENLNQGSVSDSGISNDAIALSPTKDFTMASGEEKYRSLLRGDEEKNTKWRYGVPPNYDVVNKLFEEERTKVWPVGSLEERVQSLVKNFEMEMFHKISRSDFKTIDLNKYTFSLNGRKPLAVEEVSKLGGYNPFLQTSLPEEYRYYNAAEETAESSHRAFTATFLRGFALEIIQVYSGPPNIVFKFRHWGYMEGPFKSHAPTGERVEFYGVAIFKVNEKDKIEGVEFFFDPAELLGKLLKGPGLDGSVEKAVSSCPVLRNTG 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18549744 18558868 + CePI673135_08g006820.1 Cec08g0682 209324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0682 696 Gene3D - 570 673 - -
Cec08g0682 696 SMART Solute_trans_a_2 27 306 IPR005178 -
Cec08g0682 696 SUPERFAMILY NTF2-like 589 671 IPR032710 -
Cec08g0682 696 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 25 420 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Cec08g0682 696 Coils Coil 391 418 - -
Cec08g0682 696 Pfam Organic solute transporter Ostalpha 28 306 IPR005178 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0682 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0365 Cec-Chr2:3387253 Cec08g0682 Cec-Chr8:18549744 3.10E-126 dispersed
Cec02g1539 Cec-Chr2:33012243 Cec08g0682 Cec-Chr8:18549744 7.90E-36 dispersed
Cec08g0682 Cec-Chr8:18549744 Cec11g0148 Cec-Chr11:1739344 5.10E-84 dispersed
Cec08g0682 Cec-Chr8:18549744 Cec03g0542 Cec-Chr3:5678937 4.90E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1224 . . . . . Bpe04g00021 . . . . . . . . Sed03g0461 . Cpe13g00666 Bhi04g01811 Tan11g1182 Cmetu01g0419 . Hepe02g2772 . Lcy10g1320 Cla08g00666 Cam08g1097 Cec08g0682 Cco08g0791 Clacu08g0803 . Cre08g0607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00527 . Chy03g00591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005100 4 4 1 1 2 1 2 0 1 1 0 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 2 3 1 41