Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0728 ATGAAGAGGTTTGTTGGTTATGTAGAGGCCATGGAGGTCCACAAGCCCTACATTGCAATGTTGTTTGTTCAATGTGTTTATTCTGGAATGGCTTTGTTCTCTAAAGCAGCCATTTCTCAAGGCATGAACCCGCCCGTGTTCGTCTTTTATCGTCAAGCTTTCGCTACCGTTGCCATGGCTCCTCTCGCCATCTTACTCGAAAGAAAAAAGGCGTTGCCTTTATCTTTCAAGTTCCTTTTCAAGGTGTTCTTGGTTTCTCTAGTTGGGATCACTTTGAGTTTAAATTTTTATTACATAGCAATTAGCCACACATCAGCAACATTTGCAGCTGCCACTACCAACACCATTCCTGCCATTACCCTCCTTTTGGCTCTCCTTTTCGGATATGAAAGCATTTGCATAAGAAAGTTTGAAGGGATGGCCAAATTGATGGGGGCAGTGATAGGTTTTTCAGGGGCTTTAGTATTTGCTTTTGTGAAGGGTCCACCAATGAAATTCATGAATTGGTATCCACAAACAAATAATAATAATAATTCAACTTCATTTCAAGCTTATTCCACCTTGGAATGGATTAAGGGTTCATTCACTATGCTTTCTGCCAACATTGCTTGGTCTTTATGGCTTGTTTTGCAGGGCTCCATTGTGAAGGAATATCCAGCAAAATTGAGAATTACAACTTTGCAGTGTTTCTTTAGTTTGATACAATCAGCTTTGTGGGCTTTGGTAATGGAGAGAAACCCACAAGCTTGGAAACTTGGATGGAATCTTCAACTCTTCTCTGTTGCCTATTGTGGTATAATTGTGACTGGAATGACGTATTGGCTACAAATATGGAGTGTAGAGAAGAAAGGGCCAGTTTTCACAGCTATGTTTACACCATTAGCTCTCATCATAACAGCAATCTTCTCAGCATTACTATGGAAGGAAACCCTTCATTGGGGAAGTCTTGGTGGGGGTATTTTGCTGGTGATGGGACTTTACTTTGTTCTATGGGGAAAGAAGAGAGAAGAAGAACAACAACAACAAAGTCATGACACCAAAGACGAAACCATTTTGGAGTGCATTACAACAACACATCACTAA 1083 40.63 MKRFVGYVEAMEVHKPYIAMLFVQCVYSGMALFSKAAISQGMNPPVFVFYRQAFATVAMAPLAILLERKKALPLSFKFLFKVFLVSLVGITLSLNFYYIAISHTSATFAAATTNTIPAITLLLALLFGYESICIRKFEGMAKLMGAVIGFSGALVFAFVKGPPMKFMNWYPQTNNNNNSTSFQAYSTLEWIKGSFTMLSANIAWSLWLVLQGSIVKEYPAKLRITTLQCFFSLIQSALWALVMERNPQAWKLGWNLQLFSVAYCGIIVTGMTYWLQIWSVEKKGPVFTAMFTPLALIITAIFSALLWKETLHWGSLGGGILLVMGLYFVLWGKKREEEQQQQSHDTKDETILECITTTHH 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19001705 19004561 + CePI673135_08g007280.1 Cec08g0728 209370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0728 360 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020(InterPro)
Cec08g0728 360 Pfam EamA-like transporter family 16 148 IPR000620 GO:0016020(InterPro)
Cec08g0728 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 149 - -
Cec08g0728 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 228 336 - -
Cec08g0728 360 PANTHER WAT1-RELATED PROTEIN 18 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0728 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1254 Cec-Chr4:32128548 Cec08g0728 Cec-Chr8:19001705 2.50E-74 dispersed
Cec04g1255 Cec-Chr4:32150271 Cec08g0728 Cec-Chr8:19001705 3.20E-69 dispersed
Cec06g1469 Cec-Chr6:28166232 Cec08g0728 Cec-Chr8:19001705 1.40E-46 dispersed
Cec08g0728 Cec-Chr8:19001705 Cec10g1660 Cec-Chr10:31079733 7.00E-61 dispersed
Cec08g0728 Cec-Chr8:19001705 Cec04g1250 Cec-Chr4:32084613 1.20E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1380 . . . . . . . . Cmo04g02564 . . . . . . . . Bhi04g01775 . . . Hepe02g2137 . Lcy10g1352 Cla08g00712 Cam08g1139 Cec08g0728 Cco08g0836 Clacu08g0847 . Cre08g0648 . . Cone17ag0785 Cone20ag0379 . . . Cme03g00317 . . . Bda13g01413 . . Bma01g00742 . . . . . . Car04g02357 . Cpe01g02117 . . . . . . . . . . . . . . . Lsi08g00554 . Chy03g00510 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244