Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0729 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGTGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGTCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGATGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTTGGGCGAAGCCGAAGATTCTACTCCAGAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTACGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCTGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCGCAGCCGCCTCCTCAGCCGGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCACTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 46.73 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEVSENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSRKVSPKVPAGSYSIAQITYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19023887 19026406 + CePI673135_08g007290.1 Cec08g0729 209371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0729 432 CDD F-box_AtTLP-like 53 97 - -
Cec08g0729 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cec08g0729 432 FunFam Tubby-like F-box protein 110 432 - -
Cec08g0729 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cec08g0729 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Cec08g0729 432 Pfam Tub family 114 427 IPR000007 -
Cec08g0729 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Cec08g0729 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cec08g0729 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cec08g0729 432 Gene3D - 48 103 - -
Cec08g0729 432 MobiDBLite consensus disorder prediction 368 388 - -
Cec08g0729 432 PANTHER TUBBY-RELATED 40 431 - -
Cec08g0729 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0683 Cec-Chr5:5601650 Cec08g0729 Cec-Chr8:19023887 1.00E-118 dispersed
Cec07g1124 Cec-Chr7:26454673 Cec08g0729 Cec-Chr8:19023887 9.10E-96 dispersed
Cec08g0347 Cec-Chr8:8778268 Cec08g0729 Cec-Chr8:19023887 5.40E-201 dispersed
Cec08g0729 Cec-Chr8:19023887 Cec09g0343 Cec-Chr9:2887042 1.80E-10 dispersed
Cec08g0729 Cec-Chr8:19023887 Cec05g2076 Cec-Chr5:32637920 8.90E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30037 PF01167 Tub 9.00E-116 CL0395 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0729 K19600 - csv:101203074 849.736