Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0729 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGTGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGTCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGATGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTTGGGCGAAGCCGAAGATTCTACTCCAGAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTACGTACGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCTGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCGTACCGTCGCAGCCGCCTCCTCAGCCGGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCACTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 46.73 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEVSENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSRKVSPKVPAGSYSIAQITYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19023887 19026406 + CePI673135_08g007290.1 Cec08g0729 209371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0729 432 CDD F-box_AtTLP-like 53 97 - -
Cec08g0729 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cec08g0729 432 FunFam Tubby-like F-box protein 110 432 - -
Cec08g0729 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cec08g0729 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Cec08g0729 432 Pfam Tub family 114 427 IPR000007 -
Cec08g0729 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Cec08g0729 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Cec08g0729 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Cec08g0729 432 Gene3D - 48 103 - -
Cec08g0729 432 MobiDBLite consensus disorder prediction 368 388 - -
Cec08g0729 432 PANTHER TUBBY-RELATED 40 431 - -
Cec08g0729 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cec08g0729 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0729 K19600 - - csv:101203074 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec05g0683 Cec-Chr5:5601650 Cec08g0729 Cec-Chr8:19023887 1.00E-118 dispersed
Cec07g1124 Cec-Chr7:26454673 Cec08g0729 Cec-Chr8:19023887 9.10E-96 dispersed
Cec08g0347 Cec-Chr8:8778268 Cec08g0729 Cec-Chr8:19023887 5.40E-201 dispersed
Cec08g0729 Cec-Chr8:19023887 Cec09g0343 Cec-Chr9:2887042 1.80E-10 dispersed
Cec08g0729 Cec-Chr8:19023887 Cec05g2076 Cec-Chr5:32637920 8.90E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0347 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 2.3e-178 622.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT1G76900 69.4 3.7e-168 588.2
Cec05g0683 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 4.6e-110 395.2
Cec05g1168 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cec08g0729 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 2.7e-94 342.0
Cec08g0347 . 173 431 TUB Transcription Factor Family AT1G25280 67.3 1.4e-93 339.7
Cec05g0683 . 154 387 TUB Transcription Factor Family AT1G25280 53.2 5.2e-69 258.1
Cec05g2076 . 289 516 TUB Transcription Factor Family AT1G25280 53.4 5.4e-66 248.1
Cec04g1658 . 176 413 TUB Transcription Factor Family AT1G25280 51.7 5.0e-64 241.5
Cec06g0545 . 154 362 TUB Transcription Factor Family AT1G25280 50.6 1.1e-53 207.2
Cec05g0683 . 98 387 TUB Transcription Factor Family AT5G18680 61.7 1.4e-94 343.2
Cec06g0545 . 98 362 TUB Transcription Factor Family AT5G18680 61.4 2.8e-87 318.9
Cec08g0729 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 3.7e-84 308.5
Cec08g0347 . 112 431 TUB Transcription Factor Family AT5G18680 52.5 1.1e-83 307.0
Cec05g1168 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cec05g2076 . 225 516 TUB Transcription Factor Family AT5G18680 52.2 6.8e-78 287.7
Cec07g1124 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 9.3e-67 250.8
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.4e-139 493.0
Cec05g2076 . 111 516 TUB Transcription Factor Family AT2G18280 59.0 9.9e-125 443.7
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 4.7e-119 424.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G18280 51.7 8.4e-116 414.1
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 7.1e-115 411.0
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 3.9e-113 405.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 4.9e-100 361.7
Cec05g0683 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 1.4e-158 556.2
Cec06g0545 . 1 362 TUB Transcription Factor Family AT2G47900 66.5 3.0e-145 511.9
Cec08g0347 . 1 431 TUB Transcription Factor Family AT2G47900 55.1 3.9e-132 468.4
Cec05g1168 . 1 428 TUB Transcription Factor Family AT2G47900 56.2 9.5e-131 463.8
Cec08g0729 . 1 432 TUB Transcription Factor Family AT2G47900 56.1 6.2e-130 461.1
Cec05g2076 . 120 516 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cec04g1658 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.2e-114 410.2
Cec07g1124 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 3.9e-100 362.1
Cec09g0343 . 82 297 TUB Transcription Factor Family AT1G16070 61.4 6.5e-73 271.2
Cec08g0347 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cec05g1168 . 66 428 TUB Transcription Factor Family AT1G43640 68.3 8.5e-147 516.9
Cec08g0729 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 1.4e-141 499.6
Cec05g0683 . 49 387 TUB Transcription Factor Family AT1G43640 52.6 3.4e-103 372.1
Cec05g2076 . 178 516 TUB Transcription Factor Family AT1G43640 50.1 1.0e-99 360.5
Cec06g0545 . 49 362 TUB Transcription Factor Family AT1G43640 51.0 1.1e-93 340.5
Cec05g2076 . 144 516 TUB Transcription Factor Family AT1G47270 63.9 8.8e-134 473.8
Cec04g1658 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 7.7e-122 434.1
Cec05g1168 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cec08g0729 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 5.5e-112 401.4
Cec08g0347 . 30 431 TUB Transcription Factor Family AT1G47270 51.3 7.2e-112 401.0
Cec07g1124 . 50 383 TUB Transcription Factor Family AT1G53320 78.0 3.3e-154 541.6
Cec05g0683 . 98 387 TUB Transcription Factor Family AT3G06380 62.8 7.8e-95 344.0
Cec06g0545 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 3.4e-82 302.0
Cec05g1168 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cec08g0729 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cec05g2076 . 229 516 TUB Transcription Factor Family AT3G06380 52.9 6.0e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30037 PF01167 Tub 9.00E-116 CL0395 Cec TF