Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0786 ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGATGAGGAACAATGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCACAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCGGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTCGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGACAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGTGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAATGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCATCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCAATTTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTGTATTTGATCACCTTCCAATGCCATCGTTTTCCACCAATATCTTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAATCAGCAAACCGCTTCCGGGACAATTTTCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCAGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCAGGAGATACGATGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAACGGTCGGGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATGCTCAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCTCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACAATAG 2076 44.56 MNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPMRNNEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRTENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMWENEGRLVGRDSNGNLSGRLKVESVIEAAMLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINFSPFSPPRKKPRLPIPAETSVFDHLPMPSFSTNIFDTTNPLLSITANKIPAGIQGARHTQFGLSSPNLQISKPLPGQFSPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSHWLTMGNHIQSSKESSKESKETKPTHIILFGQLIFPNQQNSNSCSGDTMNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGRDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRKLGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRQ 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19629432 19631924 - CePI673135_08g007860.1 Cec08g0786 209428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0786 691 Gene3D - 320 391 - -
Cec08g0786 691 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Cec08g0786 691 FunFam Auxin response factor 319 392 - -
Cec08g0786 691 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec08g0786 691 ProSiteProfiles PB1 domain profile. 603 683 IPR053793 -
Cec08g0786 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 683 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec08g0786 691 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
Cec08g0786 691 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Cec08g0786 691 SUPERFAMILY DNA-binding pseudobarrel domain 110 225 IPR015300 -
Cec08g0786 691 FunFam Auxin response factor 120 224 - -
Cec08g0786 691 Gene3D - 602 686 - -
Cec08g0786 691 Gene3D - 120 224 IPR015300 -
Cec08g0786 691 MobiDBLite consensus disorder prediction 545 596 - -
Cec08g0786 691 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2231 Cec-Chr2:39724274 Cec08g0786 Cec-Chr8:19629432 3.60E-210 dispersed
Cec08g0786 Cec-Chr8:19629432 Cec08g1114 Cec-Chr8:23045001 1.50E-91 dispersed
Cec04g1047 Cec-Chr4:30034202 Cec08g0786 Cec-Chr8:19629432 3.40E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30041 PF02362 B3 3.20E-20 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0786 K14486 - csv:101204568 1192.95