Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0815 ATGTTTGCTACTACTGGCATTCTCTTCTTCATCTGGTTTTTGAGCTCCACTCTGCCTTCTCTTACCATGCCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCAGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATTTCCAGAAGGCAAATGCTGTCCATTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGTGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGACGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCCTTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTTAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCCGGAGACGAAAGCTCCTCCAGCTCGGGATCCAGTGGCAGCAGCGATGGTGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACTGCCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACGGTTTTAGTTCTGTACACAAACTCGAACTACAATGCTTTATTATCAACATTGTCATTGTAG 1494 51.0 MFATTGILFFIWFLSSTLPSLTMPTFNFNLTLPHLLPDPETVAYQVQRSVNDSISRRQMLSIHSKGQSNSCQTGNPIDDCWRCDSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDESSSSSGSSGSSDGGGDYFGMIFGGGGINSAPLPSLSVVNMIILTLFTVLVLYTNSNYNALLSTLSL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19998474 20004351 - CePI673135_08g008150.1 Cec08g0815 209457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0815 497 Pfam Pectate lyase 157 338 IPR002022 -
Cec08g0815 497 Gene3D - 74 416 IPR012334 -
Cec08g0815 497 PANTHER PECTATE LYASE 18-RELATED 37 416 IPR045032 GO:0030570(InterPro)
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cec08g0815 497 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cec08g0815 497 SMART amb_all 149 346 IPR002022 -
Cec08g0815 497 MobiDBLite consensus disorder prediction 416 442 - -
Cec08g0815 497 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Cec08g0815 497 FunFam Pectate lyase 74 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g0993 Cec-Chr4:29581621 Cec08g0815 Cec-Chr8:19998474 1.90E-40 dispersed
Cec08g0815 Cec-Chr8:19998474 Cec08g1811 Cec-Chr8:29105402 1.50E-141 dispersed
Cec04g1082 Cec-Chr4:30350018 Cec08g0815 Cec-Chr8:19998474 9.90E-180 wgd
Cec05g2352 Cec-Chr5:34761519 Cec08g0815 Cec-Chr8:19998474 1.70E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0815 K01728 - csv:101207535 920.613