Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0897 ATGGAGAAGTTCCCTGTTTATTCTCTTCATTCCCTGTTGATGTTTCTATTCATTTTGAGTCTCATCGTTCCAAGTCAGCCTCTTCCGACTGAGACTCTAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGACTGGTGTTCTTCATTCTTGGATTGATTCTAAATCCCCTTGTGGATTCTCTGGGATTACTTGCAATCAGGTTTCCGAGAAAGTCGTAGAAATTTCGTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAAAGTCTCACAACACTTTCATTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAATTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGATAATGAAATGGTTAAGAGGATTCCTGATCTTTCTCAGCTGAGGAAGTTGGAGGTTCTAGATCTGTCAATCAACTTCTTTTCTGGCCAATTTCCAAGCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTTTGAGGCTGGTGAGATACCGGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTGGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTAAAGGCATTGGAGACATTGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAATAATCTGAATAAGCTTGAGCTTTTTGTTAACAAATTGACTGGAGAAATCCCACCAGAGATTTCAAATCTTACCCTTCTGCAAGAAATTGATATGTCTGCAAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGAAACCTGAGGAATTTGGTGGTTTTTCAATTGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGTAAACTTCGGCAGATTCGCTCCGCTCAACAGCATTGACATATCAGAGAATCAATTTTCAGGGAACTTTCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTTTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTTTAGCTGACTGCAAATCAATCCAAAGATTCAGAATCAATAATAATCAAATGTCTGGCAGGATTCCAGATGGGGTATGGGCTCTTCCTAATGCAAAAATGATTGATCTTAGTGATAATGAATTCACTGGAACTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAAACTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAACAATGAATTCAATGGAGAAATACCTTCTGAAATTGGTTTCCTCAAGCAACTTTCATCATTACACCTGGAAGTAAATTCTTTGAATGGATCAATCCCATTAGAGATTGGTAATTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCGTTTGCGTTAATCAGCTCTTTGAACTCACTGAACCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAATCCTTGGAGAAGATGAAACTAAGTTCAATCGATTTTTCGGGAAATCAGCTGTTCGGGAGAGTTCCATCCAGTCTTCTCGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGGTTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTAATGATAAACTTGTATTTTTCAGTATCATAGTTTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCTCGGTGAGAATGGCCTAGATACCAGTCAGGAAGGGGACCAACAAGGAATTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATATGCAATTTTAAAGAAGACAATTTGATAGGTAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATTTGAAGAAAAATGGTGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACCAATGGTAACCTGTGTGAAGCACTTCAGAGACAGATCAAAGGTGGACAGCCTGAACTGAACTGGTATCAGAGGTACAGGATTGCATTGGGAGCAGCCAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTTGATGAAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGCTTCTGAGCACAGCTCTCTTGCTGGCACTCATGGCTATATTGCTCCTGAGCTAGCGTATACTCTGAAAGTTTCCGAAAAAAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAGATGAATATGGAGAAGGAAAAGATATAGTCTACTGGATCTCAACACACCTCGATGACCGTGATAATGTCCTCAAGCTTCTAGATATCAAAGTTGCATCTGAAGCCGTCCAAAATGACATGCTTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATCGGACGCTGATCCCTACTCTTCTTCAGTGTCCCTGAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2928 39.48 MEKFPVYSLHSLLMFLFILSLIVPSQPLPTETLALLRFKENLKDPTGVLHSWIDSKSPCGFSGITCNQVSEKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGELPYQLINCSNLRVLNLTDNEMVKRIPDLSQLRKLEVLDLSINFFSGQFPSWVGNLTGLVSLGLGENEFEAGEIPESIGNLKNLTWLYLANAQLRGEIPESLFELKALETLDLSRNKLSGKLSKSISKLNNLNKLELFVNKLTGEIPPEISNLTLLQEIDMSANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLADCKSIQRFRINNNQMSGRIPDGVWALPNAKMIDLSDNEFTGTISPNIGLSTSLSQLVLPNNKFSGKLPSELGKLTNLERLYLSNNEFNGEIPSEIGFLKQLSSLHLEVNSLNGSIPLEIGNCERLVDINFAQNSLSGSIPSSFALISSLNSLNLSSNKLTGIIPESLEKMKLSSIDFSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLVTCTGKHSQKGVLNDKLVFFSIIVSILVCVLAGLVLVSCNYLKLGENGLDTSQEGDQQGIPKWKIASFHQVEIDADEICNFKEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQPELNWYQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDEDYEPKIADFGVAKVADQFQSASEHSSLAGTHGYIAPELAYTLKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDNVLKLLDIKVASEAVQNDMLKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSVSLNSSNKNIKDFV 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20768069 20771280 - CePI673135_08g008970.1 Cec08g0897 209539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0897 975 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 FunFam Probable inactive receptor kinase RLK902 28 181 - -
Cec08g0897 975 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Cec08g0897 975 PRINTS Leucine-rich repeat signature 217 230 - -
Cec08g0897 975 PRINTS Leucine-rich repeat signature 526 539 - -
Cec08g0897 975 Gene3D Transferase(Phosphotransferase) domain 1 755 972 - -
Cec08g0897 975 Gene3D Ribonuclease Inhibitor 181 238 IPR032675 -
Cec08g0897 975 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Cec08g0897 975 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Cec08g0897 975 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0897 975 FunFam leucine-rich repeat receptor-like protein kinase TDR 755 963 - -
Cec08g0897 975 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515(InterPro)
Cec08g0897 975 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Cec08g0897 975 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Cec08g0897 975 SMART LRR_typ_2 454 478 IPR003591 -
Cec08g0897 975 SMART LRR_typ_2 190 214 IPR003591 -
Cec08g0897 975 SMART LRR_typ_2 262 286 IPR003591 -
Cec08g0897 975 SMART LRR_typ_2 94 118 IPR003591 -
Cec08g0897 975 SMART LRR_typ_2 526 549 IPR003591 -
Cec08g0897 975 SMART LRR_typ_2 141 165 IPR003591 -
Cec08g0897 975 SUPERFAMILY L domain-like 248 573 - -
Cec08g0897 975 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0897 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec08g0897 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 290 - -
Cec08g0897 975 SUPERFAMILY Protein kinase-like (PK-like) 676 952 IPR011009 -
Cec08g0897 975 SUPERFAMILY L domain-like 55 280 - -
Cec08g0897 975 Pfam Protein kinase domain 681 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0897 975 FunFam Receptor-like protein kinase HSL1 291 594 - -
Cec08g0897 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 329 954 IPR051564 GO:0016020(PANTHER)
Cec08g0897 975 Gene3D Ribonuclease Inhibitor 316 594 IPR032675 -
Cec08g0897 975 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec06g0176 Cec-Chr6:1778534 Cec08g0897 Cec-Chr8:20768069 5.60E-40 dispersed
Cec08g0897 Cec-Chr8:20768069 Cec08g1233 Cec-Chr8:24279053 5.50E-76 dispersed
Cec11g0278 Cec-Chr11:3025179 Cec08g0897 Cec-Chr8:20768069 1.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72194 PF00069 Pkinase 1.70E-48 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0897 - - - 0.0