Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0914 ATGGACTTTACAGTTCTAAATTCAGAGTTGTGCTCTCTCAAATGTGATTCCATGGCCGTCAAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCTCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGGCGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAATTTTTCGAATGTTGCAGAGGTTTCATTGCTGGCTATCAAAGCATTGTTTGGAACATCAAATGCAGTGGAGCGAGAGAGAAAGAGGAGATCGAGTCTATCTAGGGGCTGTAATGAGGTTGGATTGAAATGTAATGAAATGAATTTGGATTCTAATCCCAGTTCGATCTATGATTTATTGTTCATGGACATTGATAAGATTCTTCCATTTAGCAGTACCTTAGAATGTCATAACCTTAAAAATAAGGGCGATGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAAGCACCCAGAGATGAGGAAGAGCGTAATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGTTGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCTTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCCAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTCATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTGCTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCTCCACCCCTCTCCATTACTCCACTTTACCAATGTCGCAAATTTAG 1410 42.34 MDFTVLNSELCSLKCDSMAVKGIKRRRRTASSSPTVGGGDAQPHKSMADHSTATKRSSRFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSNVAEVSLLAIKALFGTSNAVERERKRRSSLSRGCNEVGLKCNEMNLDSNPSSIYDLLFMDIDKILPFSSTLECHNLKNKGDVQTKKGLRWIPKHPEMRKSVISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYISWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYCSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLSTPLHYSTLPMSQI 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20976427 20989610 - CePI673135_08g009140.1 Cec08g0914 209556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0914 469 CDD AP2 58 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 Gene3D AP2/ERF domain 58 123 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 Gene3D AP2/ERF domain 258 319 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 ProSiteProfiles AP2/ERF domain profile. 259 317 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 CDD AP2 258 319 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 SUPERFAMILY DNA-binding domain 58 122 IPR016177 GO:0003677(InterPro)
Cec08g0914 469 Pfam AP2 domain 258 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 SUPERFAMILY DNA-binding domain 258 319 IPR016177 GO:0003677(InterPro)
Cec08g0914 469 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 348 - -
Cec08g0914 469 FunFam AP2-like ethylene-responsive transcription factor 258 319 - -
Cec08g0914 469 SMART rav1_2 259 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 SMART rav1_2 59 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g0914 469 MobiDBLite consensus disorder prediction 328 353 - -
Cec08g0914 469 MobiDBLite consensus disorder prediction 23 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0914 Cec-Chr8:20976427 Cec09g0344 Cec-Chr9:2893611 4.50E-60 dispersed
Cec02g0996 Cec-Chr2:14511573 Cec08g0914 Cec-Chr8:20976427 1.80E-16 transposed
Cec10g1500 Cec-Chr10:29363872 Cec08g0914 Cec-Chr8:20976427 9.90E-77 transposed
Cec05g2427 Cec-Chr5:35504013 Cec08g0914 Cec-Chr8:20976427 4.70E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30053 PF00847 AP2 4.80E-09 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0914 - - - 0.0