Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0917 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAGACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGTAGCTGCTGCTGCTTTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGCCCACGAGAGTCTTGCGAATTCTTTCATGATCCCTATAAGGGAAAAAGTGATGAAGGGAAAGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACAAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGTCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 831 46.57 MLRLQWLSSSLVPSFNSELSPETVSNCRLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQQSAFEPGSQTDSFASQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITSPEDSSRVNNANPRYGGDFEWNR 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21004591 21008224 + CePI673135_08g009170.1 Cec08g0917 209559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0917 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 276 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cec08g0917 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 276 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec08g0917 276 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 84 260 - -
Cec08g0917 276 Pfam Whirly transcription factor 99 233 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cec08g0917 276 Gene3D Transcriptional Coactivator Pc4; Chain A 84 256 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0075 Cec-Chr8:1255681 Cec08g0917 Cec-Chr8:21004591 1.20E-30 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30054 PF08536 Whirly 9.30E-61 CL0609 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0917 K26559 - csv:101203474 478.789