Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0930 ATGGTTGGCTTTAGAACCTTGTTTGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATAGCCCAAGATGCCTACAATCCTGACCCCGAACTTGTTACCGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGGAAATATAAAGGACCATGTTTGGCGACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCTTCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGATGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAAAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAACATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG 1308 47.63 MVGFRTLFVCSLLFFVVANADVDEDEYWRNRAAEAQKIAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKRKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLACAPRKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21099033 21100595 + CePI673135_08g009300.1 Cec08g0930 209572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0930 435 Gene3D - 83 428 IPR012334 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cec08g0930 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cec08g0930 435 SMART amb_all 158 355 IPR002022 -
Cec08g0930 435 Pfam Pectate lyase 168 349 IPR002022 -
Cec08g0930 435 SUPERFAMILY Pectin lyase-like 75 397 IPR011050 -
Cec08g0930 435 PANTHER PECTATE LYASE 18-RELATED 18 430 IPR045032 GO:0030570(InterPro)
Cec08g0930 435 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1533 Cec-Chr1:29916046 Cec08g0930 Cec-Chr8:21099033 8.00E-176 dispersed
Cec08g0930 Cec-Chr8:21099033 Cec10g1498 Cec-Chr10:29345860 2.50E-185 dispersed
Cec08g0930 Cec-Chr8:21099033 Cec05g2688 Cec-Chr5:37456422 6.70E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0930 K01728 - csv:101217922 822.772