Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0938 ATGGCCCACTCTGCTCCCCCCCGGTTCGTCCTTATGGCTATCCACGCCGGACCTTTTTCTTTTCCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCGACTTCGAATCTACGCCTCGCTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGATTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATGTAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTCGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAGGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACATTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCGGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTGCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGGGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTTCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAAATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTACTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATACTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACACTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGCTTACTCTGA 3750 42.32 MAHSAPPRFVLMAIHAGPFSFPITVRVFSTFYPIPYCHFQVPTSNLRLASLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRIPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLHYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVTYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYTGGGIPESLLNEMFGSEEDTSEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASLL 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21180477 21187159 - CePI673135_08g009380.1 Cec08g0938 209580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0938 1249 CDD PAS 885 996 IPR000014 -
Cec08g0938 1249 FunFam Phytochrome 530 661 - -
Cec08g0938 1249 SMART gaf_1 343 535 IPR003018 GO:0005515(InterPro)
Cec08g0938 1249 SUPERFAMILY GAF domain-like 533 710 - -
Cec08g0938 1249 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 343 515 IPR016132 -
Cec08g0938 1249 SMART HKATPase_4 1130 1242 IPR003594 -
Cec08g0938 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1130 1240 IPR003594 -
Cec08g0938 1249 Pfam Phytochrome region 538 712 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 Gene3D PAS domain 888 1002 - -
Cec08g0938 1249 Gene3D - 1081 1246 IPR036890 -
Cec08g0938 1249 ProSitePatterns Phytochrome chromophore attachment site signature. 443 452 IPR013516 -
Cec08g0938 1249 MobiDBLite consensus disorder prediction 124 144 - -
Cec08g0938 1249 Gene3D PAS domain 199 446 - -
Cec08g0938 1249 SUPERFAMILY PYP-like sensor domain (PAS domain) 199 311 IPR035965 -
Cec08g0938 1249 ProSiteProfiles PAS repeat profile. 874 926 IPR000014 -
Cec08g0938 1249 Pfam GAF domain 346 524 IPR003018 GO:0005515(InterPro)
Cec08g0938 1249 Gene3D - 324 686 IPR029016 -
Cec08g0938 1249 ProSiteProfiles PAS repeat profile. 741 811 IPR000014 -
Cec08g0938 1249 Coils Coil 522 542 - -
Cec08g0938 1249 FunFam Phytochrome 737 868 - -
Cec08g0938 1249 Pfam PAS fold 744 858 IPR013767 GO:0006355(InterPro)
Cec08g0938 1249 Pfam PAS fold 874 996 IPR013767 GO:0006355(InterPro)
Cec08g0938 1249 Pfam PAS fold 194 310 IPR013654 GO:0006355(InterPro)
Cec08g0938 1249 SUPERFAMILY PYP-like sensor domain (PAS domain) 747 854 IPR035965 -
Cec08g0938 1249 NCBIfam PAS domain S-box protein 748 864 IPR000014 -
Cec08g0938 1249 CDD HATPase_Phy-like 1129 1240 IPR044767 -
Cec08g0938 1249 SMART pas_2 873 942 IPR000014 -
Cec08g0938 1249 SMART pas_2 743 809 IPR000014 -
Cec08g0938 1249 Pfam His Kinase A (phospho-acceptor) domain 1019 1079 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec08g0938 1249 PANTHER OS08G0260000 PROTEIN 126 1119 - -
Cec08g0938 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1076 1237 IPR036890 -
Cec08g0938 1249 PRINTS Phytochrome signature 836 853 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 258 280 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 443 464 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 555 575 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 673 691 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 744 760 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 856 876 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 640 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 763 778 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 358 377 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 ProSiteProfiles Histidine kinase domain profile. 1025 1244 IPR005467 -
Cec08g0938 1249 SMART HisKA_10 1018 1082 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec08g0938 1249 SUPERFAMILY PYP-like sensor domain (PAS domain) 888 994 IPR035965 -
Cec08g0938 1249 Gene3D PAS domain 736 873 - -
Cec08g0938 1249 Gene3D - 530 703 IPR043150 -
Cec08g0938 1249 CDD PAS 752 858 IPR000014 -
Cec08g0938 1249 SUPERFAMILY GAF domain-like 323 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0302 Cec-Chr2:2747341 Cec08g0938 Cec-Chr8:21180477 0.00E+00 dispersed
Cec05g0782 Cec-Chr5:6481878 Cec08g0938 Cec-Chr8:21180477 0.00E+00 dispersed
Cec08g0938 Cec-Chr8:21180477 Cec08g0941 Cec-Chr8:21221715 3.60E-298 proximal
Cec08g0938 Cec-Chr8:21180477 Cec08g0942 Cec-Chr8:21224890 3.20E-68 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0938 K12120 - csv:101208491 2150.17