Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0938 ATGGCCCACTCTGCTCCCCCCCGGTTCGTCCTTATGGCTATCCACGCCGGACCTTTTTCTTTTCCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCGACTTCGAATCTACGCCTCGCTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGATTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATGTAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTCGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAGGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACATTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCGGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTGCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGGGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTTCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAAATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTACTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATACTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACACTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGCTTACTCTGA 3750 42.32 MAHSAPPRFVLMAIHAGPFSFPITVRVFSTFYPIPYCHFQVPTSNLRLASLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRIPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLHYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVTYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYTGGGIPESLLNEMFGSEEDTSEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASLL 1249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21180477 21187159 - CePI673135_08g009380.1 Cec08g0938 209580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0938 1249 CDD PAS 885 996 IPR000014 -
Cec08g0938 1249 FunFam Phytochrome 530 661 - -
Cec08g0938 1249 SMART gaf_1 343 535 IPR003018 GO:0005515(InterPro)
Cec08g0938 1249 SUPERFAMILY GAF domain-like 533 710 - -
Cec08g0938 1249 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 343 515 IPR016132 -
Cec08g0938 1249 SMART HKATPase_4 1130 1242 IPR003594 -
Cec08g0938 1249 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1130 1240 IPR003594 -
Cec08g0938 1249 Pfam Phytochrome region 538 712 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 Gene3D PAS domain 888 1002 - -
Cec08g0938 1249 Gene3D - 1081 1246 IPR036890 -
Cec08g0938 1249 ProSitePatterns Phytochrome chromophore attachment site signature. 443 452 IPR013516 -
Cec08g0938 1249 MobiDBLite consensus disorder prediction 124 144 - -
Cec08g0938 1249 Gene3D PAS domain 199 446 - -
Cec08g0938 1249 SUPERFAMILY PYP-like sensor domain (PAS domain) 199 311 IPR035965 -
Cec08g0938 1249 ProSiteProfiles PAS repeat profile. 874 926 IPR000014 -
Cec08g0938 1249 Pfam GAF domain 346 524 IPR003018 GO:0005515(InterPro)
Cec08g0938 1249 Gene3D - 324 686 IPR029016 -
Cec08g0938 1249 ProSiteProfiles PAS repeat profile. 741 811 IPR000014 -
Cec08g0938 1249 Coils Coil 522 542 - -
Cec08g0938 1249 FunFam Phytochrome 737 868 - -
Cec08g0938 1249 Pfam PAS fold 744 858 IPR013767 GO:0006355(InterPro)
Cec08g0938 1249 Pfam PAS fold 874 996 IPR013767 GO:0006355(InterPro)
Cec08g0938 1249 Pfam PAS fold 194 310 IPR013654 GO:0006355(InterPro)
Cec08g0938 1249 SUPERFAMILY PYP-like sensor domain (PAS domain) 747 854 IPR035965 -
Cec08g0938 1249 NCBIfam PAS domain S-box protein 748 864 IPR000014 -
Cec08g0938 1249 CDD HATPase_Phy-like 1129 1240 IPR044767 -
Cec08g0938 1249 SMART pas_2 873 942 IPR000014 -
Cec08g0938 1249 SMART pas_2 743 809 IPR000014 -
Cec08g0938 1249 Pfam His Kinase A (phospho-acceptor) domain 1019 1079 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec08g0938 1249 PANTHER OS08G0260000 PROTEIN 126 1119 - -
Cec08g0938 1249 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1076 1237 IPR036890 -
Cec08g0938 1249 PRINTS Phytochrome signature 836 853 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 258 280 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 443 464 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 555 575 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 673 691 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 744 760 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 856 876 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 640 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 763 778 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 PRINTS Phytochrome signature 358 377 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0938 1249 ProSiteProfiles Histidine kinase domain profile. 1025 1244 IPR005467 -
Cec08g0938 1249 SMART HisKA_10 1018 1082 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec08g0938 1249 SUPERFAMILY PYP-like sensor domain (PAS domain) 888 994 IPR035965 -
Cec08g0938 1249 Gene3D PAS domain 736 873 - -
Cec08g0938 1249 Gene3D - 530 703 IPR043150 -
Cec08g0938 1249 CDD PAS 752 858 IPR000014 -
Cec08g0938 1249 SUPERFAMILY GAF domain-like 323 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0938 K12120 - - csv:101208491 2150.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0302 Cec-Chr2:2747341 Cec08g0938 Cec-Chr8:21180477 0.00E+00 dispersed
Cec05g0782 Cec-Chr5:6481878 Cec08g0938 Cec-Chr8:21180477 0.00E+00 dispersed
Cec08g0938 Cec-Chr8:21180477 Cec08g0941 Cec-Chr8:21221715 3.60E-298 proximal
Cec08g0938 Cec-Chr8:21180477 Cec08g0942 Cec-Chr8:21224890 3.20E-68 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0064 . 28 1220 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1450.3
Cec11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cec01g0676 . 151 1098 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1300.8
Cec02g0285 . 289 1237 Histidine Kinase Gene Family AT2G01830 53.8 7.4e-276 947.2
Cec06g0223 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 2.5e-268 922.2
Cec02g0970 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.5e-265 912.9
Cec05g1770 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 1.1e-291 999.6
Cec08g0938 . 126 1245 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1833.2
Cec02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1207.6
Cec05g0782 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1191.4
Cec08g0941 . 47 679 Histidine Kinase Gene Family AT1G09570 74.4 2.8e-281 965.3
Cec05g0782 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1667.9
Cec03g0697 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1239.2
Cec08g0938 . 146 1179 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1088.6
Cec02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 51.9 1.1e-313 1073.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT2G18790 53.5 1.7e-198 690.3
Cec02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1365.1
Cec05g0782 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1153.7
Cec08g0938 . 134 1239 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1116.7
Cec08g0941 . 45 679 Histidine Kinase Gene Family AT5G35840 53.1 9.0e-200 694.5
Cec05g0782 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1703.7
Cec03g0697 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1276.9
Cec08g0938 . 133 1240 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1136.3
Cec02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1113.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT4G16250 52.7 1.1e-192 671.0
Cec03g0697 . 15 1119 Histidine Kinase Gene Family AT4G18130 62.8 0.0e+00 1368.6
Cec05g0782 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1268.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56