Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0939 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGCAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGAAGTTGTGGGTTTGAAGCTAAACAATTTTCCAACAATGTTGAAAGTCCTTCAGCTGCCGCCGCCCGTTCCCTGATCCACGGTTGCCAACGCCCGCAGGTTGAGATTCGTTTTGCTCTTTCTTTCCTTGATCTCGGCTTTTTCTCAATCGAAAGTTTTGTTCTGCATACCTCATCGTCTTCTCCCATTCCTTCGCCCATCTCTCTCCTCCTCCTCCTCTCTCTCTCTGTGCGACTATTCTCCATTAACTTGGATCAGAAGCAAGCTTTTAATTTCCCTCCTCTTAGATGA 1182 47.21 MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTRSCGFEAKQFSNNVESPSAAAARSLIHGCQRPQVEIRFALSFLDLGFFSIESFVLHTSSSSPIPSPISLLLLLSLSVRLFSINLDQKQAFNFPPLR 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21204990 21211709 + CePI673135_08g009390.1 Cec08g0939 209581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0939 393 FunFam Basic helix-loop-helix transcription factor 174 246 - -
Cec08g0939 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
Cec08g0939 393 MobiDBLite consensus disorder prediction 130 150 - -
Cec08g0939 393 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983(InterPro)
Cec08g0939 393 MobiDBLite consensus disorder prediction 104 125 - -
Cec08g0939 393 Gene3D - 174 246 IPR036638 GO:0046983(InterPro)
Cec08g0939 393 SMART finulus 183 233 IPR011598 GO:0046983(InterPro)
Cec08g0939 393 Coils Coil 224 244 - -
Cec08g0939 393 CDD bHLH_AtBPE_like 167 252 - -
Cec08g0939 393 MobiDBLite consensus disorder prediction 86 165 - -
Cec08g0939 393 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 253 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec08g0939 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1786 Cec-Chr2:35711070 Cec08g0939 Cec-Chr8:21204990 4.40E-17 dispersed
Cec06g1853 Cec-Chr6:31891516 Cec08g0939 Cec-Chr8:21204990 4.10E-69 dispersed
Cec08g0939 Cec-Chr8:21204990 Cec09g0837 Cec-Chr9:7777346 1.80E-33 dispersed
Cec08g0939 Cec-Chr8:21204990 Cec02g0524 Cec-Chr2:4933702 8.00E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30056 PF00010 HLH 3.80E-08 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0939 - - - 0.0