Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0941 ATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCACCGCCGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTCACCCTCCTCAACCGCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCCCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGTATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATCATTGTACAATAACAAGTATCATATGGATTCCACTGGTTTGAGTAATGATAGCTTGTATGATGCCGGGTTCCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCTGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACTGCATCGGAGATTATGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCGATTCATTCTTTGCAACTTATTTTAAGAAACACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCCGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCCATTCGAGATAAAAACACACAATCCTAACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTAGGATGA 2043 45.18 MQSFNPTLSNPVLPLTTPLQSISPPTQLPHHPPPPPPPPPHTSTKSKKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFPDVTLLNRILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLARLCDTMVQEVFELTGYDRVMVYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAASLYNNKYHMDSTGLSNDSLYDAGFPGALALGDAVCWMAVVRISSEDMIFWFRSHTASEIMWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVPFEIKTHNPNIESGSISLIVNACASKDLG 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21221715 21224634 + CePI673135_08g009410.1 Cec08g0941 209583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0941 680 Gene3D - 50 372 IPR029016 -
Cec08g0941 680 Pfam Phytochrome region 436 545 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 Gene3D - 435 547 IPR043150 -
Cec08g0941 680 MobiDBLite consensus disorder prediction 1 48 - -
Cec08g0941 680 MobiDBLite consensus disorder prediction 25 43 - -
Cec08g0941 680 Coils Coil 377 397 - -
Cec08g0941 680 MobiDBLite consensus disorder prediction 1 24 - -
Cec08g0941 680 CDD PAS 587 659 IPR000014 -
Cec08g0941 680 SMART gaf_1 190 390 IPR003018 GO:0005515(InterPro)
Cec08g0941 680 SUPERFAMILY PYP-like sensor domain (PAS domain) 582 655 IPR035965 -
Cec08g0941 680 NCBIfam PAS domain S-box protein 583 649 IPR000014 -
Cec08g0941 680 Pfam PAS fold 48 156 IPR013654 GO:0006355(InterPro)
Cec08g0941 680 SUPERFAMILY GAF domain-like 170 377 - -
Cec08g0941 680 ProSiteProfiles PAS repeat profile. 576 646 IPR000014 -
Cec08g0941 680 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 190 370 IPR016132 -
Cec08g0941 680 Gene3D PAS domain 575 673 - -
Cec08g0941 680 PANTHER OS08G0260000 PROTEIN 45 660 - -
Cec08g0941 680 Gene3D PAS domain 57 160 - -
Cec08g0941 680 Pfam PAS fold 579 662 IPR013767 GO:0006355(InterPro)
Cec08g0941 680 SUPERFAMILY PYP-like sensor domain (PAS domain) 50 160 IPR035965 -
Cec08g0941 680 Pfam GAF domain 191 379 IPR003018 GO:0005515(InterPro)
Cec08g0941 680 ProSitePatterns Phytochrome chromophore attachment site signature. 290 299 IPR013516 -
Cec08g0941 680 SUPERFAMILY GAF domain-like 388 543 - -
Cec08g0941 680 PRINTS Phytochrome signature 105 127 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 598 613 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 671 680 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 579 595 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 473 492 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 205 224 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 290 311 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 506 524 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 SMART pas_2 578 644 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0941 K12120 - - csv:101219585 1148.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0938 Cec-Chr8:21180477 Cec08g0941 Cec-Chr8:21221715 3.60E-298 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0064 . 28 1220 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1450.3
Cec11g0114 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cec01g0676 . 151 1098 Histidine Kinase Gene Family AT2G01830 71.7 0.0e+00 1300.8
Cec02g0285 . 289 1237 Histidine Kinase Gene Family AT2G01830 53.8 7.4e-276 947.2
Cec06g0223 . 100 1026 Histidine Kinase Gene Family AT2G01830 53.8 2.5e-268 922.2
Cec02g0970 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.5e-265 912.9
Cec05g1770 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 1.1e-291 999.6
Cec08g0938 . 126 1245 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1833.2
Cec02g0302 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1207.6
Cec05g0782 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1191.4
Cec08g0941 . 47 679 Histidine Kinase Gene Family AT1G09570 74.4 2.8e-281 965.3
Cec05g0782 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1667.9
Cec03g0697 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.6 0.0e+00 1239.2
Cec08g0938 . 146 1179 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1088.6
Cec02g0302 . 26 1069 Histidine Kinase Gene Family AT2G18790 51.9 1.1e-313 1073.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT2G18790 53.5 1.7e-198 690.3
Cec02g0302 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1365.1
Cec05g0782 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1153.7
Cec08g0938 . 134 1239 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1116.7
Cec08g0941 . 45 679 Histidine Kinase Gene Family AT5G35840 53.1 9.0e-200 694.5
Cec05g0782 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1703.7
Cec03g0697 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1276.9
Cec08g0938 . 133 1240 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1136.3
Cec02g0302 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1113.2
Cec08g0941 . 44 678 Histidine Kinase Gene Family AT4G16250 52.7 1.1e-192 671.0
Cec03g0697 . 15 1119 Histidine Kinase Gene Family AT4G18130 62.8 0.0e+00 1368.6
Cec05g0782 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.6 0.0e+00 1268.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56