Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0941 ATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCACCGCCGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTCACCCTCCTCAACCGCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCCCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGTATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATCATTGTACAATAACAAGTATCATATGGATTCCACTGGTTTGAGTAATGATAGCTTGTATGATGCCGGGTTCCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCTGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACTGCATCGGAGATTATGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCGATTCATTCTTTGCAACTTATTTTAAGAAACACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCCGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCCATTCGAGATAAAAACACACAATCCTAACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTAGGATGA 2043 45.18 MQSFNPTLSNPVLPLTTPLQSISPPTQLPHHPPPPPPPPPHTSTKSKKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFPDVTLLNRILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLARLCDTMVQEVFELTGYDRVMVYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAASLYNNKYHMDSTGLSNDSLYDAGFPGALALGDAVCWMAVVRISSEDMIFWFRSHTASEIMWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVPFEIKTHNPNIESGSISLIVNACASKDLG 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21221715 21224634 + CePI673135_08g009410.1 Cec08g0941 209583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0941 680 Gene3D - 50 372 IPR029016 -
Cec08g0941 680 Pfam Phytochrome region 436 545 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 Gene3D - 435 547 IPR043150 -
Cec08g0941 680 MobiDBLite consensus disorder prediction 1 48 - -
Cec08g0941 680 MobiDBLite consensus disorder prediction 25 43 - -
Cec08g0941 680 Coils Coil 377 397 - -
Cec08g0941 680 MobiDBLite consensus disorder prediction 1 24 - -
Cec08g0941 680 CDD PAS 587 659 IPR000014 -
Cec08g0941 680 SMART gaf_1 190 390 IPR003018 GO:0005515(InterPro)
Cec08g0941 680 SUPERFAMILY PYP-like sensor domain (PAS domain) 582 655 IPR035965 -
Cec08g0941 680 NCBIfam PAS domain S-box protein 583 649 IPR000014 -
Cec08g0941 680 Pfam PAS fold 48 156 IPR013654 GO:0006355(InterPro)
Cec08g0941 680 SUPERFAMILY GAF domain-like 170 377 - -
Cec08g0941 680 ProSiteProfiles PAS repeat profile. 576 646 IPR000014 -
Cec08g0941 680 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 190 370 IPR016132 -
Cec08g0941 680 Gene3D PAS domain 575 673 - -
Cec08g0941 680 PANTHER OS08G0260000 PROTEIN 45 660 - -
Cec08g0941 680 Gene3D PAS domain 57 160 - -
Cec08g0941 680 Pfam PAS fold 579 662 IPR013767 GO:0006355(InterPro)
Cec08g0941 680 SUPERFAMILY PYP-like sensor domain (PAS domain) 50 160 IPR035965 -
Cec08g0941 680 Pfam GAF domain 191 379 IPR003018 GO:0005515(InterPro)
Cec08g0941 680 ProSitePatterns Phytochrome chromophore attachment site signature. 290 299 IPR013516 -
Cec08g0941 680 SUPERFAMILY GAF domain-like 388 543 - -
Cec08g0941 680 PRINTS Phytochrome signature 105 127 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 598 613 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 671 680 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 579 595 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 473 492 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 205 224 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 290 311 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 PRINTS Phytochrome signature 506 524 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cec08g0941 680 SMART pas_2 578 644 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0938 Cec-Chr8:21180477 Cec08g0941 Cec-Chr8:21221715 3.60E-298 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0941 K12120 - csv:101219585 1148.27