Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0955 ATGTCGGGAACTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAGCGTCAGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAACGCCGGAATTGAAGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGCAGTGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGTACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATGGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTCTCACCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACACTGAGCGAATCTTCCGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAATTTTTTCATATTGCTGGACTTGGTGGAATCAACAAATCCGTATTCTCCTGTTTCGTTTCACTGCTTCGGTGTTTTGTAAAGGGGAAAGGAAAAAGGATTAGGAATTGGGAAATAGTCATGGCTGTTCTTCCATTGGGAATACGCAGCAGGTGA 1230 48.7 MSGTETGVITSREPFSVSVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFMADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWKFFHIAGLGGINKSVFSCFVSLLRCFVKGKGKRIRNWEIVMAVLPLGIRSR 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21395096 21404086 + CePI673135_08g009550.1 Cec08g0955 209597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0955 409 MobiDBLite consensus disorder prediction 72 159 - -
Cec08g0955 409 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Cec08g0955 409 MobiDBLite consensus disorder prediction 122 142 - -
Cec08g0955 409 FunFam AT-hook motif nuclear-localized protein 1-like 172 302 - -
Cec08g0955 409 MobiDBLite consensus disorder prediction 320 349 - -
Cec08g0955 409 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Cec08g0955 409 Gene3D - 172 307 - -
Cec08g0955 409 MobiDBLite consensus disorder prediction 315 349 - -
Cec08g0955 409 CDD DUF296 171 285 IPR005175 -
Cec08g0955 409 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 335 IPR039605 GO:0003680(InterPro)
Cec08g0955 409 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0271 Cec-Chr1:2730179 Cec08g0955 Cec-Chr8:21395096 1.10E-51 dispersed
Cec02g1774 Cec-Chr2:35577057 Cec08g0955 Cec-Chr8:21395096 2.60E-39 dispersed
Cec06g0394 Cec-Chr6:4428535 Cec08g0955 Cec-Chr8:21395096 1.50E-62 dispersed
Cec08g0955 Cec-Chr8:21395096 Cec11g1942 Cec-Chr11:33528232 5.70E-91 dispersed
Cec08g0955 Cec-Chr8:21395096 Cec10g0178 Cec-Chr10:1741462 3.20E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0955 - - - 0.0