Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g0971 ATGAGTTGCTTTTTTTGTGTTACTCCTCGTACTGAGGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAACAGGGAAAGTTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCAATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTTGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTCGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTGTTGTAGCACTCGAAATGACACCCATGCCCAGGAATCAGATCCCTGAAATTGCTAAACTTCTGTTTGGAGGTTGCTGTATAGAAGTTGCTGAAAAAGCTATGTGCATAGACATGTGTGAAGCGTGTTAG 1149 44.3 MSCFFCVTPRTEDGSRVESDSRVRFESRHSVNSSGTWRGKEGESNRESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEMTPMPRNQIPEIAKLLFGGCCIEVAEKAMCIDMCEAC 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21528929 21532932 + CePI673135_08g009710.1 Cec08g0971 209613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g0971 382 ProSiteProfiles Protein kinase domain profile. 71 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0971 382 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Cec08g0971 382 SMART serkin_6 71 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0971 382 FunFam Serine/threonine-protein kinase PBS1 147 359 - -
Cec08g0971 382 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524(InterPro)
Cec08g0971 382 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec08g0971 382 PANTHER OS07G0668900 PROTEIN 34 348 - -
Cec08g0971 382 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Cec08g0971 382 SUPERFAMILY Protein kinase-like (PK-like) 52 348 IPR011009 -
Cec08g0971 382 Gene3D Transferase(Phosphotransferase) domain 1 147 355 - -
Cec08g0971 382 CDD STKc_IRAK 77 345 - -
Cec08g0971 382 MobiDBLite consensus disorder prediction 32 51 - -
Cec08g0971 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0971 Cec-Chr8:21528929 Cec11g1916 Cec-Chr11:33394559 3.40E-154 dispersed
Cec08g0971 Cec-Chr8:21528929 Cec08g0973 Cec-Chr8:21549632 7.40E-77 proximal
Cec11g1886 Cec-Chr11:33090248 Cec08g0971 Cec-Chr8:21528929 2.60E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72198 PF00069 Pkinase 3.90E-48 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g0971 - - - 0.0