Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1020 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCAGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA 762 43.04 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22143498 22148503 + CePI673135_08g010200.1 Cec08g1020 209662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1020 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec08g1020 253 Pfam PHD-finger 200 246 IPR019787 -
Cec08g1020 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cec08g1020 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cec08g1020 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cec08g1020 253 SMART PHD_3 199 247 IPR001965 -
Cec08g1020 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cec08g1020 253 MobiDBLite consensus disorder prediction 145 174 - -
Cec08g1020 253 FunFam PHD finger alfin-like protein 192 248 - -
Cec08g1020 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cec08g1020 253 MobiDBLite consensus disorder prediction 145 193 - -
Cec08g1020 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1020 Cec-Chr8:22143498 Cec09g0082 Cec-Chr9:715298 2.10E-112 dispersed
Cec08g1020 Cec-Chr8:22143498 Cec11g0170 Cec-Chr11:1873021 3.40E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30061 PF12165 Alfin 2.10E-69 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1020 K26274 - csv:101208889 464.536