Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1020 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCAGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA 762 43.04 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22143498 22148503 + CePI673135_08g010200.1 Cec08g1020 209662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1020 253 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cec08g1020 253 Pfam PHD-finger 200 246 IPR019787 -
Cec08g1020 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cec08g1020 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cec08g1020 253 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Cec08g1020 253 SMART PHD_3 199 247 IPR001965 -
Cec08g1020 253 CDD PHD_AL_plant 199 249 IPR044104 -
Cec08g1020 253 MobiDBLite consensus disorder prediction 145 174 - -
Cec08g1020 253 FunFam PHD finger alfin-like protein 192 248 - -
Cec08g1020 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Cec08g1020 253 MobiDBLite consensus disorder prediction 145 193 - -
Cec08g1020 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1020 K26274 - - csv:101208889 464.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1020 Cec-Chr8:22143498 Cec09g0082 Cec-Chr9:715298 2.10E-112 dispersed
Cec08g1020 Cec-Chr8:22143498 Cec11g0170 Cec-Chr11:1873021 3.40E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g0733 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.8e-114 407.9
Cec08g1020 . 9 250 Alfin-like Transcription Factor Family AT1G14510 71.1 2.8e-96 348.6
Cec11g0170 . 62 301 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Cec09g0082 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 3.2e-92 335.1
Cec10g2211 . 22 259 Alfin-like Transcription Factor Family AT1G14510 59.3 2.4e-79 292.4
Cec07g0476 . 8 117 Alfin-like Transcription Factor Family AT1G14510 70.5 9.3e-44 174.1
Cec11g0170 . 54 303 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Cec08g1020 . 1 252 Alfin-like Transcription Factor Family AT5G26210 74.0 2.4e-108 388.7
Cec09g0082 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.7 3.9e-98 354.8
Cec10g0733 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Cec10g2211 . 30 261 Alfin-like Transcription Factor Family AT5G26210 58.1 2.4e-79 292.4
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT5G26210 74.3 6.5e-45 177.9
Cec11g0170 . 54 303 Alfin-like Transcription Factor Family AT3G42790 70.1 4.8e-101 364.4
Cec08g1020 . 1 252 Alfin-like Transcription Factor Family AT3G42790 70.5 1.8e-100 362.5
Cec09g0082 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 2.7e-96 348.6
Cec10g0733 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 5.9e-91 330.9
Cec10g2211 . 30 261 Alfin-like Transcription Factor Family AT3G42790 58.3 2.0e-78 289.3
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT3G42790 73.3 4.6e-43 171.8
Cec10g2211 . 28 262 Alfin-like Transcription Factor Family AT5G05610 75.4 9.1e-105 376.7
Cec08g1020 . 8 252 Alfin-like Transcription Factor Family AT5G05610 66.5 1.8e-92 335.9
Cec11g0170 . 61 303 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Cec09g0082 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.9 9.7e-91 330.1
Cec10g0733 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Cec07g0476 . 1 117 Alfin-like Transcription Factor Family AT5G05610 79.5 1.4e-52 203.4
Cec07g0477 . 5 127 Alfin-like Transcription Factor Family AT5G05610 75.8 1.8e-52 203.0
Cec10g2211 . 65 262 Alfin-like Transcription Factor Family AT3G11200 76.2 1.8e-86 315.8
Cec08g1020 . 44 252 Alfin-like Transcription Factor Family AT3G11200 65.6 1.9e-75 279.3
Cec09g0082 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Cec11g0170 . 97 303 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Cec10g0733 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.0e-70 260.8
Cec07g0477 . 5 127 Alfin-like Transcription Factor Family AT3G11200 73.0 6.2e-50 194.5
Cec07g0476 . 43 117 Alfin-like Transcription Factor Family AT3G11200 92.0 7.1e-38 154.5
Cec10g0733 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Cec11g0170 . 54 211 Alfin-like Transcription Factor Family AT2G02470 76.6 6.7e-66 247.7
Cec08g1020 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Cec09g0082 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.1e-63 238.8
Cec10g2211 . 22 157 Alfin-like Transcription Factor Family AT2G02470 71.7 2.7e-54 209.1
Cec07g0476 . 8 117 Alfin-like Transcription Factor Family AT2G02470 71.4 2.1e-43 172.9
Cec08g1020 . 1 167 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Cec11g0170 . 54 213 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Cec09g0082 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.1e-68 255.0
Cec10g0733 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.7e-67 250.4
Cec10g2211 . 29 188 Alfin-like Transcription Factor Family AT5G20510 58.6 6.0e-51 197.6
Cec07g0476 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30061 PF12165 Alfin 2.10E-69 No_clan Cec TF