Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec08g1020 | ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCAGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCAGTATAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCTTGA | 762 | 43.04 | MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22143498 | 22148503 | + | CePI673135_08g010200.1 | Cec08g1020 | 209662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec08g1020 | 253 | PANTHER | CPG BINDING PROTEIN | 8 | 252 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec08g1020 | 253 | Pfam | PHD-finger | 200 | 246 | IPR019787 | - | |
Cec08g1020 | 253 | ProSitePatterns | Zinc finger PHD-type signature. | 200 | 246 | IPR019786 | - | |
Cec08g1020 | 253 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cec08g1020 | 253 | SUPERFAMILY | FYVE/PHD zinc finger | 189 | 250 | IPR011011 | - | |
Cec08g1020 | 253 | SMART | PHD_3 | 199 | 247 | IPR001965 | - | |
Cec08g1020 | 253 | CDD | PHD_AL_plant | 199 | 249 | IPR044104 | - | |
Cec08g1020 | 253 | MobiDBLite | consensus disorder prediction | 145 | 174 | - | - | |
Cec08g1020 | 253 | FunFam | PHD finger alfin-like protein | 192 | 248 | - | - | |
Cec08g1020 | 253 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 248 | IPR013083 | - | |
Cec08g1020 | 253 | MobiDBLite | consensus disorder prediction | 145 | 193 | - | - | |
Cec08g1020 | 253 | ProSiteProfiles | Zinc finger PHD-type profile. | 197 | 249 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec08g1020 | Cec-Chr8:22143498 | Cec09g0082 | Cec-Chr9:715298 | 2.10E-112 | dispersed | |
Cec08g1020 | Cec-Chr8:22143498 | Cec11g0170 | Cec-Chr11:1873021 | 3.40E-126 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30061 | PF12165 | Alfin | 2.10E-69 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec08g1020 | K26274 | - | csv:101208889 | 464.536 |