Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1038 ATGGAGGAAGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCGACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTAGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 51.77 MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFSRPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22277827 22278249 + CePI673135_08g010380.1 Cec08g1038 209680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1038 140 MobiDBLite consensus disorder prediction 90 140 - -
Cec08g1038 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Cec08g1038 140 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982(InterPro)
Cec08g1038 140 MobiDBLite consensus disorder prediction 99 127 - -
Cec08g1038 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 106 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cec08g1038 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1038 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1985 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.9e-89 323.6
Cec09g1450 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Cec09g1450 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cec06g1985 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Cec09g1450 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Cec06g1985 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cec06g1985 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Cec06g1985 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 2.1e-80 295.8
Cec09g1450 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Cec09g1450 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Cec06g1985 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.0e-50 194.9
Cec11g1361 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 8.3e-60 227.6
Cec08g1038 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 66.2 2.3e-38 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30063 PF00808 CBFD_NFYB_HMF 1.40E-19 CL0012 Cec TF