Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1072 ATGGATGTCTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCGGAGGTTTTGGAACTTGAGAAGGCTACGATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGTTGTGCTACACAGTACAAGTCAGAACTATGCAAGCGTCTCAAAGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGGGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1143 41.38 MDVSRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCATQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22578531 22582178 - CePI673135_08g010720.1 Cec08g1072 209714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1072 380 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 377 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cec08g1072 380 Pfam Magnesium transporter MRS2-like 20 206 - -
Cec08g1072 380 Coils Coil 169 189 - -
Cec08g1072 380 Gene3D Magnesium transport protein CorA, transmembrane region 91 311 - -
Cec08g1072 380 CDD Mrs2_Mfm1p-like 17 377 IPR039204 -
Cec08g1072 380 FunFam Magnesium transporter MRS2-1 5 88 - -
Cec08g1072 380 Gene3D - 4 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1072 K16075 - - csv:101220835 656.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g1072 Cec-Chr8:22578531 Cec10g1297 Cec-Chr10:27136508 1.20E-106 dispersed
Cec08g1072 Cec-Chr8:22578531 Cec06g0671 Cec-Chr6:7578908 1.10E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1297 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cec08g1072 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Cec06g0671 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Cec07g0092 . 594 966 MRS2 Gene Family AT5G64560 68.8 1.8e-131 466.1
Cec02g0743 . 14 495 MRS2 Gene Family AT3G19640 64.6 7.8e-156 547.4
Cec05g1124 . 53 443 MRS2 Gene Family AT3G58970 69.1 4.9e-141 498.0
Cec02g0026 . 1 427 MRS2 Gene Family AT3G58970 60.4 4.9e-125 444.9
Cec08g1072 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Cec10g1297 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cec06g0671 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Cec07g0092 . 594 928 MRS2 Gene Family AT5G09690 63.7 2.4e-108 389.0
Cec10g1297 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.6e-78 288.1
Cec06g0671 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Cec07g0092 . 630 888 MRS2 Gene Family AT5G09720 61.7 4.8e-76 281.6
Cec10g1297 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cec08g1072 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Cec01g1374 . 16 439 MRS2 Gene Family AT5G22830 68.5 1.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34