Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1081 ATGGGAAGAGGGAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTGTGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGGCATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAAGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGCATTCACAGAGACGATTTCTTGGAGAAGAATTGAATGATTTGGAGACTAAGGAACTCGACCAACTAGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCAAACTATGTTTGATCAGTTGTCTGATCTCCAGAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTTCTTCTCTTCATACACCATGGGATTCTTCACCCAACAATTTGCAATACTGCAGACAGCCTGAAGACTTTCTTCAACGCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAGCAGAAGTTTCAAACCAAGAAAATGGTGTAAACTCTGGGCCAAATGGTAATGGGTTGTCTTCACAATGGATGTTGCTTTGA 723 39.83 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELNDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSSSLHTPWDSSPNNLQYCRQPEDFLQRNNNIIALENSYNPAEVSNQENGVNSGPNGNGLSSQWMLL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22650142 22655820 + CePI673135_08g010810.1 Cec08g1081 209723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1081 240 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 Pfam K-box region 86 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec08g1081 240 Coils Coil 117 144 - -
Cec08g1081 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 FunFam MADS-box transcription factor 1 13 88 - -
Cec08g1081 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec08g1081 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec08g1081 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 Coils Coil 150 173 - -
Cec08g1081 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec08g1081 240 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec08g1081 240 MobiDBLite consensus disorder prediction 216 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g2114 Cec-Chr4:39048396 Cec08g1081 Cec-Chr8:22650142 1.20E-38 dispersed
Cec07g1716 Cec-Chr7:32698954 Cec08g1081 Cec-Chr8:22650142 1.10E-65 dispersed
Cec08g0211 Cec-Chr8:3858851 Cec08g1081 Cec-Chr8:22650142 2.40E-37 dispersed
Cec08g1081 Cec-Chr8:22650142 Cec08g1201 Cec-Chr8:23910284 3.20E-25 dispersed
Cec11g1531 Cec-Chr11:29576698 Cec08g1081 Cec-Chr8:22650142 9.90E-07 dispersed
Cec08g1081 Cec-Chr8:22650142 Cec08g1082 Cec-Chr8:22663580 9.50E-46 tandem
Cec08g0201 Cec-Chr8:3764796 Cec08g1081 Cec-Chr8:22650142 2.30E-32 transposed
Cec01g1704 Cec-Chr1:31662116 Cec08g1081 Cec-Chr8:22650142 3.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30065 PF01486 K-box 2.50E-27 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1081 K09264 - csv:101220998 416.772