Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1098 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCCCCCCCACCGCCGCCGCCCCCGGCCGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCCGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTTTGGCTTCCAATGCCAGGTGA 537 58.85 MSSAHSPSSSSSSSSSFPPTAAAPGRVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22811002 22811538 + CePI673135_08g010980.1 Cec08g1098 209740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1098 178 PANTHER RING-H2 FINGER PROTEIN ATL67 15 177 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Cec08g1098 178 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Cec08g1098 178 SUPERFAMILY RING/U-box 112 160 - -
Cec08g1098 178 CDD RING-H2_EL5-like 113 155 - -
Cec08g1098 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 160 IPR013083 -
Cec08g1098 178 Pfam Ring finger domain 113 155 IPR001841 -
Cec08g1098 178 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1194 Cec-Chr4:31512533 Cec08g1098 Cec-Chr8:22811002 6.60E-25 dispersed
Cec05g1056 Cec-Chr5:9261355 Cec08g1098 Cec-Chr8:22811002 2.40E-23 dispersed
Cec07g1624 Cec-Chr7:31773142 Cec08g1098 Cec-Chr8:22811002 4.40E-24 dispersed
Cec08g1098 Cec-Chr8:22811002 Cec10g1831 Cec-Chr10:33120336 1.40E-25 dispersed
Cec08g1098 Cec-Chr8:22811002 Cec05g0101 Cec-Chr5:915188 3.00E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1098 - - - 0.0