Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1123 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCATCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCTGGTGGGTTTTTGGGTCAAGATTTCCATAGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCGTTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGATCGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGATTTCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCAGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCATGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATTGATTGGGCTTCGATTTTAACATCTTGA 1092 49.73 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSFPDFSFSSSIQTESTSYPSDCSPPMTHLFSGGFLGQDFHSVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVIDSDDDLKTADVRSSGSDFCCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23152688 23153779 + CePI673135_08g011230.1 Cec08g1123 209765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1123 363 MobiDBLite consensus disorder prediction 302 345 - -
Cec08g1123 363 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Cec08g1123 363 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677(InterPro)
Cec08g1123 363 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1123 363 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1123 363 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1123 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 360 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec08g1123 363 CDD AP2 160 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1123 363 MobiDBLite consensus disorder prediction 268 286 - -
Cec08g1123 363 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1123 363 SMART rav1_2 161 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec08g1123 363 MobiDBLite consensus disorder prediction 254 345 - -
Cec08g1123 363 Pfam AP2 domain 161 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0190 Cec-Chr1:1878879 Cec08g1123 Cec-Chr8:23152688 5.00E-28 dispersed
Cec07g1618 Cec-Chr7:31681919 Cec08g1123 Cec-Chr8:23152688 1.60E-32 dispersed
Cec08g1123 Cec-Chr8:23152688 Cec10g1732 Cec-Chr10:31980028 1.90E-21 dispersed
Cec06g0821 Cec-Chr6:10069849 Cec08g1123 Cec-Chr8:23152688 8.30E-29 transposed
Cec11g1592 Cec-Chr11:30255730 Cec08g1123 Cec-Chr8:23152688 1.50E-87 transposed
Cec04g1588 Cec-Chr4:35308096 Cec08g1123 Cec-Chr8:23152688 1.50E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30070 PF00847 AP2 4.80E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1123 K09286 - csv:101222833 572.392