Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1152 ATGGATCAGGCACAGGGCTCACAGCAGACAGCTCTAGGAGTGGTGGGGATGGTGGCCGTGGCCGTGGCCTACACCTCTTTTTTTTGCAGCTGCAGTTGGGTGGGACAATGGATTTTGGAGATGGTTAAGCTGTTAAATAGGCATGATGTTGACCTTGGGTATTTAAGGAGGTTTAGAGAGCTGCTTTGCTTTGTATTAAGTTTGATCCATCCATCACAATATGAACAACGGCTCCAAATCCCCATCGCCAACCCAAGGAAAACCAATCAGATGCCGAGACGGCCGGGAGAGCCGCTTCTCATAGAGGAGATTGAAGTTGACCCTCCAAAAATTGGGGAAGTTCGGATCAAAATTCTTTGTACTTCCCTCTGTCATTCTGATGCTACCGTTTGGAATATGAGACAAGAACTTTTTTCATTCCCCATCATTTTTGGACACGAAGCTGTCAGAATTGTGGAAAGTGTGGGAGAAGAAGTGAAGGAAGTGAAAGAAGGGGAAATGGTGTTGCCTGTGTTTCAATCAAATTGCAAAGAATGCAGAGAGTGCAAGAGTTTGAAGAGCAACAAATGCAGTGTTTTTGGGGGCAAATTTGGGATAGGAATGCCAAGAGATGGCACAAGCAGATTTAGGGATGTGAATGGACACCCATTGAACCATTTCTTATATGTTTCAAGCTTTTTGGAGTATACAGTTGTTGATGTCCATAACCTTGTTCCAATCAATCCGGAGCTTCCTATGGATAAGGCCACCTTGTTTGGCTGTGGGGTCCCCGCTGGGATTGGAGCTGCGTGGAAGGTTGCTGACGTGGACGAGGGTTCCACCGTGGCTATCTTCGGCCTTGGTATTGTTGGACTCTCAGTAGCGGAAGGATCAAAACGCCGTAAAGCTTCAAAGATCATCGGCATTGATTTGAATCCTAAAAAATTTGAGATTGCAGAAAAGTTTGGGGTGACTGATTTTATCAATCCAGCTACTTGTGGAGACAAGCCAATTCATGAAGTTATTAAGGAACAAACTGCTGGGGGAGCAGACTACTGCTTTGAGTGCATTGGCTCGGCTTCCCTCATGGAAGAAGCTATCAAAAGCACTAGAGAGGGTTGGGGAAAGACGGTGATTTTGGGAGTAGAGAAAGATGGTGCGGCATTCAAAGTGAAGTCCTTTGATATAATAAATGGGATCACCATCACCGGCGCTCTTTTTGGAGGTCTTAAGCCAAAATCAGACGTTCCAATGCTTATCAACAAGTTTTTGGACAAACCCATTCCTTATTCCACTCGGCCCATAACAGCCCATTACCCAAACGAAGGATTGACGTGGCAAATTATAATTGGAGATCAACTTTCGCTCTTTCGCTTCGGCTGGAATCATCGGAACCACCGATCGCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAGCTGAGAGCTGTGGTAAATTCCCTGGATTAGATCCCCAGATTCCACTGGAAATAGAAATAGTTGTGAGTTCCATTAGCATGACTGGATTCGCCGGTTTCGACTCCAATAAATGGTTGGAGAATCCTCCCTTTGTCCTGCAATATGCCTTGAAAGAAAATGAGAAGGTGGATATACCAAAGCCCTCTGAAGTAAAAGAGGCGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGACGTTGAAACCAGTCCTGCTACTGAAAATGACAGTGGAGCTGCCGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCATCGATGAGCAACCTGAGATTAAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACTCGCTACATTGAGTACCACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCAGATCTTGTTTCATCAAATTACATGGAGCTAGAACCACTCCTGTAA 2151 45.75 MDQAQGSQQTALGVVGMVAVAVAYTSFFCSCSWVGQWILEMVKLLNRHDVDLGYLRRFRELLCFVLSLIHPSQYEQRLQIPIANPRKTNQMPRRPGEPLLIEEIEVDPPKIGEVRIKILCTSLCHSDATVWNMRQELFSFPIIFGHEAVRIVESVGEEVKEVKEGEMVLPVFQSNCKECRECKSLKSNKCSVFGGKFGIGMPRDGTSRFRDVNGHPLNHFLYVSSFLEYTVVDVHNLVPINPELPMDKATLFGCGVPAGIGAAWKVADVDEGSTVAIFGLGIVGLSVAEGSKRRKASKIIGIDLNPKKFEIAEKFGVTDFINPATCGDKPIHEVIKEQTAGGADYCFECIGSASLMEEAIKSTREGWGKTVILGVEKDGAAFKVKSFDIINGITITGALFGGLKPKSDVPMLINKFLDKPIPYSTRPITAHYPNEGLTWQIIIGDQLSLFRFGWNHRNHRSLLLLPSMAEAQSEKTPSLAESCGKFPGLDPQIPLEIEIVVSSISMTGFAGFDSNKWLENPPFVLQYALKENEKVDIPKPSEVKEAENPENAAPAEVVVKNDEPPVEADADQGSDNSPAQENNGDAPAAAAVEDVETSPATENDSGAADESSGAGEEENSGDQESIDEQPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECNKFAKYYRSLCPSEWVEKWNEQRENGTFPDLVSSNYMELEPLL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23414526 23428534 + CePI673135_08g011520.1 Cec08g1152 209794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1152 716 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 649 692 - -
Cec08g1152 716 FunFam S-(hydroxymethyl)glutathione dehydrogenase 259 398 - -
Cec08g1152 716 SUPERFAMILY Cytochrome c oxidase subunit h 631 702 IPR036549 GO:0005739(InterPro)
Cec08g1152 716 Pfam Cytochrome oxidase c subunit VIb 642 702 IPR048280 -
Cec08g1152 716 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 244 417 IPR036291 -
Cec08g1152 716 Pfam Zinc-binding dehydrogenase 283 413 IPR013149 -
Cec08g1152 716 FunFam alcohol dehydrogenase 1-like isoform X1 95 258 - -
Cec08g1152 716 CDD Cyt_c_Oxidase_VIb 630 702 - -
Cec08g1152 716 Pfam Alcohol dehydrogenase GroES-like domain 112 240 IPR013154 -
Cec08g1152 716 Gene3D - 93 433 - -
Cec08g1152 716 Gene3D Cytochrome c oxidase, subunit VIb 627 707 IPR036549 GO:0005739(InterPro)
Cec08g1152 716 FunFam Cytochrome c oxidase subunit 6B1 627 705 - -
Cec08g1152 716 Gene3D - 259 398 - -
Cec08g1152 716 MobiDBLite consensus disorder prediction 539 638 - -
Cec08g1152 716 SUPERFAMILY GroES-like 93 264 IPR011032 -
Cec08g1152 716 PANTHER ALCOHOL DEHYDROGENASE 92 422 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1152 K00121 - - csv:101209737 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec08g0996 Cec-Chr8:21780994 Cec08g1152 Cec-Chr8:23414526 3.60E-105 dispersed
Cec08g1152 Cec-Chr8:23414526 Cec09g0968 Cec-Chr9:9267941 1.90E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g444 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01126 Cam08g1582 Cec08g1152 Cco08g1279 Clacu08g1283 . Cre08g1065 . . . . . . . Cme03g01849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00983 Csa02g02165 Chy03g01352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84