Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1161 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAACTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAACCGTCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACTCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGGGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTCAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAGTTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA 936 45.3 MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKLTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLQMVAGFQSLRLTVLHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23483568 23484931 - CePI673135_08g011610.1 Cec08g1161 209803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1161 311 MobiDBLite consensus disorder prediction 75 96 - -
Cec08g1161 311 PANTHER MAX DIMERIZATION, MAD 4 301 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec08g1161 311 Gene3D - 110 180 IPR036638 GO:0046983(InterPro)
Cec08g1161 311 MobiDBLite consensus disorder prediction 60 113 - -
Cec08g1161 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983(InterPro)
Cec08g1161 311 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Cec08g1161 311 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Cec08g1161 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1677 Cec-Chr2:34434354 Cec08g1161 Cec-Chr8:23483568 3.40E-59 dispersed
Cec03g1741 Cec-Chr3:35692507 Cec08g1161 Cec-Chr8:23483568 1.20E-46 dispersed
Cec05g0386 Cec-Chr5:3162439 Cec08g1161 Cec-Chr8:23483568 1.10E-37 dispersed
Cec08g1161 Cec-Chr8:23483568 Cec09g1173 Cec-Chr9:11859459 2.60E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30072 PF00010 HLH 4.30E-10 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1161 - - - 0.0