Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1176 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGAGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCATCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGCAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCTGGGAGGGAGGAGGATGATGGGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGAGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 741 50.61 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQQALALPAAAASGREEDDGSNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23624466 23625206 - CePI673135_08g011760.1 Cec08g1176 209818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1176 246 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cec08g1176 246 FunFam Zinc-finger homeodomain protein 2 176 244 - -
Cec08g1176 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 241 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec08g1176 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
Cec08g1176 246 MobiDBLite consensus disorder prediction 20 51 - -
Cec08g1176 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cec08g1176 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cec08g1176 246 Gene3D - 167 244 - -
Cec08g1176 246 SUPERFAMILY Homeodomain-like 169 244 IPR009057 -
Cec08g1176 246 MobiDBLite consensus disorder prediction 1 51 - -
Cec08g1176 246 MobiDBLite consensus disorder prediction 148 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1176 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1655 Cec-Chr4:35792764 Cec08g1176 Cec-Chr8:23624466 1.20E-41 dispersed
Cec08g1176 Cec-Chr8:23624466 Cec11g0010 Cec-Chr11:170889 4.40E-46 dispersed
Cec04g1544 Cec-Chr4:34928549 Cec08g1176 Cec-Chr8:23624466 3.00E-52 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g1176 . 52 246 ZF-HD Transcription Factor Family AT5G65410 51.0 8.5e-46 181.0
Cec08g1176 . 22 242 ZF-HD Transcription Factor Family AT4G24660 50.9 1.6e-50 196.4
Cec04g1544 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.8e-47 185.7
Cec10g0867 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.3 1.2e-40 163.7
Cec11g0010 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.5e-51 200.3
Cec11g0010 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 5.0e-55 211.8
Cec04g1655 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Cec10g1514 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cec09g1936 . 6 254 ZF-HD Transcription Factor Family AT5G15210 53.0 1.4e-50 196.8
Cec10g1514 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cec09g1936 . 16 258 ZF-HD Transcription Factor Family AT3G28920 58.8 4.8e-58 221.9
Cec09g1936 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 8.0e-51 198.0
Cec10g1514 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cec09g1936 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 7.8e-48 187.6
Cec11g0010 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.5e-51 200.3
Cec08g1176 . 22 242 ZF-HD Transcription Factor Family AT4G24660 50.9 1.6e-50 196.4
Cec04g1544 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.8e-47 185.7
Cec10g0867 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.3 1.2e-40 163.7
Cec09g1936 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 8.0e-51 198.0
Cec10g1514 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cec04g1655 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.1e-50 195.7
Cec08g1176 . 52 246 ZF-HD Transcription Factor Family AT5G65410 51.0 8.5e-46 181.0
Cec09g1936 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 7.8e-48 187.6
Cec10g1514 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cec09g1936 . 6 254 ZF-HD Transcription Factor Family AT5G15210 53.0 1.4e-50 196.8
Cec11g0010 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.6 5.0e-55 211.8
Cec10g1514 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cec09g1936 . 16 258 ZF-HD Transcription Factor Family AT3G28920 58.8 4.8e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30073 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cec TF