Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec08g1176 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCGCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTATTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGAGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCATCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGCAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCTGGGAGGGAGGAGGATGATGGGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGAGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 741 50.61 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSIRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQQALALPAAAASGREEDDGSNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23624466 23625206 - CePI673135_08g011760.1 Cec08g1176 209818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec08g1176 246 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cec08g1176 246 FunFam Zinc-finger homeodomain protein 2 176 244 - -
Cec08g1176 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 241 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cec08g1176 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
Cec08g1176 246 MobiDBLite consensus disorder prediction 20 51 - -
Cec08g1176 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cec08g1176 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cec08g1176 246 Gene3D - 167 244 - -
Cec08g1176 246 SUPERFAMILY Homeodomain-like 169 244 IPR009057 -
Cec08g1176 246 MobiDBLite consensus disorder prediction 1 51 - -
Cec08g1176 246 MobiDBLite consensus disorder prediction 148 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec04g1655 Cec-Chr4:35792764 Cec08g1176 Cec-Chr8:23624466 1.20E-41 dispersed
Cec08g1176 Cec-Chr8:23624466 Cec11g0010 Cec-Chr11:170889 4.40E-46 dispersed
Cec04g1544 Cec-Chr4:34928549 Cec08g1176 Cec-Chr8:23624466 3.00E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30073 PF04770 ZF-HD_dimer 2.10E-30 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec08g1176 - - - 0.0